Clat019054.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:8362089-8363501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.61 11.4 5.9 1 23 95 117 95 117 0.97 2 12 2.7e-06 0.00014 22.9 0.1 1 23 151 173 151 173 0.98 3 12 2.2e-05 0.0012 20.0 5.6 1 23 179 201 179 201 0.98 4 12 0.0033 0.17 13.2 6.6 1 23 207 229 207 229 0.97 5 12 1.5e-05 0.00078 20.5 0.5 1 23 235 257 235 257 0.98 6 12 3.4e-06 0.00018 22.6 1.2 1 23 263 285 263 285 0.98 7 12 0.0015 0.076 14.3 0.2 1 23 291 313 291 313 0.98 8 12 1.4e-05 0.00073 20.6 4.7 1 23 319 341 319 341 0.98 9 12 0.001 0.053 14.8 5.1 2 23 348 369 348 369 0.97 10 12 3.8e-05 0.002 19.3 1.2 1 23 375 397 375 397 0.98 11 12 1.1e-06 5.7e-05 24.1 1.0 1 23 403 425 403 425 0.98 12 12 0.00017 0.009 17.2 6.8 1 23 431 453 431 453 0.97
Sequence Information
- Coding Sequence
- atgattaaagcTGAACTTTCGGACGTATTTCAATGCGATGAACAGCAACCCAGCACTTCAATAGATACAAGTAATTCGAACAATAATTgtagttttgtaattaaaatagacGAATTAACTAACCAACAATTCAAGTACAAGGTGGAAAGCGACTTGCACCATGCGATTGACATAAAAGAAGAAGTTCCGACTCTGGAGGTACATGTTCAAAAAGAAGAGCAAGTGAAGGTAGAGAACGCTGGTCACAAAGTTTTTGATGAGTTTCACTTCAACGGGAACCGATTTGCTTGTGATCGTTGCAATTACACGTGCACTCGAAAAACTCGCTTGCgaagacattttaaaattcacactGGTGAAAATTTGTATCCGTGTGACTGTTGCGGTATGAAGTTTTTGTGTAAAAGCAGTTTAGGTAGGCACATGGTGACTCACTCTGGCGAAAAACCGTATCCTTGTGAAATATGCGGAgtgaaattttcacaaaaaggTTATCTTATCAGTCATTTAATAACACATTCAGGCGAAAAACCTTTTTCCTGCGAAACTTGTGATATGAAATTTTCCAGGGTTCATCACTTGCAAAGACATGTTagaactcataccggcgagagGCCGTTTCAGTGCCATTTATGCCAAATGTCTTTCACTTATAAGCAGACTTTAGATAGACACTTACATAATCACACTGGCGAAAAGCCTTACGAGTGCGCGCAGTGCGGTTTTAAGTTTTCAGCGAAGGCAGATTTACGAAATCACATGACTACTCATTCGGGGGAAAAGCCTTACACATGCGAAGTTTGCGGTTTAAAATTTGCTCGTAGTCAATATCTGCGAAGACATTTTAGAATTCACACCGGAGAGAGGCCTTTCTCCTGTGAAGTCTGCGGTTTGACCTTCGCAAACGGCACCATCCTAAAAAAACATCTGTTAACTCACACCGGGGAGAAACCTCACCAATGCAAAGTTTGCTTGAGGAAATTTACGCAAAGAAGTAATTTGATGAGTCATCTGAAAACTCATGACGGCGTTAAAACTGAAGAATGCGAGGTCTGCCATATGAAATTTGCACGTAAGCAGCACTTGTACCGGCATAAATTAACGCATTCGGGGGAGAAACGCTACGCCTGCGAACTTTGTGATATGAAGTTTCTACAAAGGGACAGCTTGCGGCGACACATGAGAAAGCATACAGGTGAAAAAACGTACGAGTGTGAAATTTGTCATATGAAATTCTCGCAAAATCCGAACCTGAAAAGTCATATGATTGTTCACACGGGGGTGAGGAGATTTGATTGCCAAATTTGCGAGCTGAAATTTACACGAAAGCATCATTTAGAAAGACATTTTAAAACCCACATTCACAAAGCGAAACTTGCCGAGGTGGAAAGTGATGAAATAGTTTCGGTATGA
- Protein Sequence
- MIKAELSDVFQCDEQQPSTSIDTSNSNNNCSFVIKIDELTNQQFKYKVESDLHHAIDIKEEVPTLEVHVQKEEQVKVENAGHKVFDEFHFNGNRFACDRCNYTCTRKTRLRRHFKIHTGENLYPCDCCGMKFLCKSSLGRHMVTHSGEKPYPCEICGVKFSQKGYLISHLITHSGEKPFSCETCDMKFSRVHHLQRHVRTHTGERPFQCHLCQMSFTYKQTLDRHLHNHTGEKPYECAQCGFKFSAKADLRNHMTTHSGEKPYTCEVCGLKFARSQYLRRHFRIHTGERPFSCEVCGLTFANGTILKKHLLTHTGEKPHQCKVCLRKFTQRSNLMSHLKTHDGVKTEECEVCHMKFARKQHLYRHKLTHSGEKRYACELCDMKFLQRDSLRRHMRKHTGEKTYECEICHMKFSQNPNLKSHMIVHTGVRRFDCQICELKFTRKHHLERHFKTHIHKAKLAEVESDEIVSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268860;
- 90% Identity
- iTF_00268860;
- 80% Identity
- -