Clat022648.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:37233208-37234560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.022 1.2 10.5 1.4 1 23 63 85 63 85 0.98 2 14 0.0006 0.031 15.5 1.8 1 23 91 113 91 113 0.98 3 14 0.0028 0.15 13.4 0.3 2 23 120 141 119 141 0.95 4 14 0.00053 0.027 15.7 0.5 1 23 147 169 147 169 0.98 5 14 4.9e-05 0.0025 18.9 1.7 1 23 175 197 175 197 0.98 6 14 0.0016 0.084 14.1 0.4 3 23 205 225 203 225 0.98 7 14 4.6e-06 0.00024 22.1 0.8 1 23 231 253 231 253 0.99 8 14 0.00018 0.0092 17.2 3.6 1 23 259 281 259 281 0.98 9 14 3.8e-06 0.0002 22.4 2.4 1 23 287 309 287 309 0.98 10 14 2.8e-06 0.00015 22.8 1.3 1 23 315 337 315 337 0.99 11 14 0.0013 0.069 14.4 1.2 1 23 343 365 343 365 0.99 12 14 0.0013 0.07 14.4 0.7 1 23 371 393 371 393 0.95 13 14 1.7e-05 0.00086 20.4 4.8 1 23 399 421 399 421 0.99 14 14 0.00011 0.0059 17.8 1.2 1 23 427 449 427 449 0.98
Sequence Information
- Coding Sequence
- ATGAATCGAGCCGAATTCCCGGATGAATTGGCGAGTGGAACTGACGGAGCAGTTAAACAAGAAGAGGAAAGTGATTTTGAAATCGAGCTGGAAGAGTTACATCATTCGATCGATATTAAAGATGAATCCATCGACGGAGATGAAAATTGTGAAATCAGTGTACAGGACCGTACTCCCACAAAACCGTTTGAGTGCACCATTTGCGCATACAAATGTAAACGTATAGGGATTTTAAACCGTCATTTACGAATACATACAGGTGAGAAACCATTTGAGTGTCAGAAttgcgattttaaaacttcacaCGTAGGAAATTTGAGACGGCATGTTCAAattcataccggcgagaaaccgtggaagtgcaaattttgcgttcaaaaattttcaaccatAGGATATTTAAAAGCTCATTTAGTGATTCATGGAAGCGAAAAACCGTATGTGTGTAATCTTTGCAATTATAAAGCTGCTCGAAAGGCACAATTAAAAGAACATTTTCGTGTTCACACCGGGGAtaaaccgtttgagtgtagcatttgcaattataaaaccTCGCGCAAAACAACtttgaaaaatcatttactagttcatacGGGGGAAAAACCGTATGGGTGTAGCATCTGCGATTATAAATCTGCACTAAAATCAACTTTAACAATTCATTTACGTAGTCACACCGGCTACAAACCGTATGAATGTAAGATTTGCGAACGGAAATATTCACAAAGAGGACAGTTAATTGTCCATACACGGTCGCACACGGGGGAAAAACCGTACGAGTGTGGCTTTTGCCATTACAAAACTTCACAAAGAGGACACCTAAACGCTCATTTAAGAATTCACACGGGCGAAAACTTGCATCGCtgtaatatttgcgattatCAATCTGTGCGAAAATCGAATTTAAAGAATCATATACGTGTTCATACGGATGAGAAACCGTACAAGTGCAACGTCTGCGATCGTAAATATCGACGAAAAGAATATTTAGATGTTCATATCATGACGCATAATGGCGTAAAACCATATGAGTGCAGcctttgcgattataaaagcACGTACAGAACCAGTTTGAAAGGTCATTTACTAACGCATATGAGCGAAAAACCATATAACTGcattatttgcgattataaaactGCACGAAAAGACAGCTTAAAAATTCATGTACGTAAGCATACGGGCGAGAAACCGTACGAGTGTAACTATTGCGGTCATAAAACCGCACGAAAATACTGTTTACAAGCCCATATACGTACGCATacaggcgagaaaccattcCAGTGTTATATTTGCCAAAAGAATTATGCTCGCAAGCAAACGTTGGCGATGCATTTAAACTCACACTGCTGA
- Protein Sequence
- MNRAEFPDELASGTDGAVKQEEESDFEIELEELHHSIDIKDESIDGDENCEISVQDRTPTKPFECTICAYKCKRIGILNRHLRIHTGEKPFECQNCDFKTSHVGNLRRHVQIHTGEKPWKCKFCVQKFSTIGYLKAHLVIHGSEKPYVCNLCNYKAARKAQLKEHFRVHTGDKPFECSICNYKTSRKTTLKNHLLVHTGEKPYGCSICDYKSALKSTLTIHLRSHTGYKPYECKICERKYSQRGQLIVHTRSHTGEKPYECGFCHYKTSQRGHLNAHLRIHTGENLHRCNICDYQSVRKSNLKNHIRVHTDEKPYKCNVCDRKYRRKEYLDVHIMTHNGVKPYECSLCDYKSTYRTSLKGHLLTHMSEKPYNCIICDYKTARKDSLKIHVRKHTGEKPYECNYCGHKTARKYCLQAHIRTHTGEKPFQCYICQKNYARKQTLAMHLNSHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -