Clat022540.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:36039046-36041373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0011 0.058 14.6 0.5 1 23 55 77 55 77 0.97 2 24 2.7e-05 0.0014 19.7 3.1 1 23 83 105 83 105 0.98 3 24 0.11 5.7 8.4 6.3 1 23 111 133 111 133 0.97 4 24 0.13 6.7 8.1 0.8 1 23 139 162 139 162 0.95 5 24 0.0011 0.058 14.6 0.4 1 23 168 190 168 190 0.98 6 24 0.0087 0.45 11.8 0.8 1 23 225 247 225 247 0.97 7 24 0.00049 0.025 15.8 1.5 1 23 252 274 252 274 0.97 8 24 0.013 0.7 11.2 1.1 3 23 282 302 280 302 0.98 9 24 0.14 7.4 8.0 3.1 1 23 308 330 308 330 0.97 10 24 0.0084 0.43 11.9 1.2 1 23 336 358 336 358 0.98 11 24 0.035 1.8 9.9 0.3 1 23 364 386 364 386 0.96 12 24 0.011 0.55 11.6 1.1 1 23 392 414 392 414 0.97 13 24 3.1e-07 1.6e-05 25.8 1.9 2 23 422 443 422 443 0.98 14 24 1.8 95 4.5 0.7 1 23 453 476 453 476 0.92 15 24 0.00021 0.011 16.9 2.4 1 23 494 516 494 516 0.98 16 24 0.0054 0.28 12.5 1.6 1 23 522 544 522 544 0.97 17 24 0.00012 0.0063 17.7 1.3 1 23 550 572 550 572 0.97 18 24 0.012 0.64 11.4 0.5 1 23 578 600 578 600 0.97 19 24 0.00017 0.0091 17.2 3.7 1 23 606 628 606 628 0.98 20 24 0.0012 0.062 14.5 0.4 1 23 634 656 634 656 0.98 21 24 0.015 0.77 11.1 2.3 1 23 662 684 662 684 0.97 22 24 0.0047 0.25 12.7 0.7 1 23 690 712 690 712 0.97 23 24 0.09 4.7 8.6 3.2 1 23 718 740 718 740 0.95 24 24 3.2 1.7e+02 3.7 3.8 1 23 746 768 746 768 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAAGTGGTGCTCTCGGAAGAGAAATATCAAGTTAAGCAAGAAATCGAGGAAGACGTAACGTTCAATTTGGAAGACTTGCATCATTCGATCGACATTAAGGAGGAAGTTCCGGTTGAAGTTGTATCCTTGGAAATTCGCCAACCTGATATTAAACCGTTTGCTTGTACAATTTGTGCTTTTAAAAGTTCACGTAAAGGAAGTTTGAATGATCATATGAAAATTCATACCGGGGAAAAACCATTTACGTGCGAAATATGCGCTCATAAATTTAGGACGcaaggaaattttaaacggcATATGATATCGCACGGTCATCGGGAACTCCACGAGTGTGATGTCTGCGACTATAAATGCACGGTGAAGGAATTTTTTAACCGGCACAAGAAAAGTCATTCCGACGAGCAACAGTTCGAATGCTCGGTTTGTGCCCAGAAATGTTTAAGCAAGGGGGCTTTGAACCGGCATATGGTGAAAATTCACAGCGGTGAGCGTCCGTACGTCTGCGAAATTTGCGATTTCAAAAGTGCCTATAAGCAAAGCCTCCGGGATCATTTAAAAGTTCATAACGGGGAGAAATATTTTGCTTGTGAAATATGCGCtcataaatgtttaaataaatctatCTTGAAACAGCATATTATGGCAACTCATACCGACGTAAAACCGTTTGCTTGTACACTCTGTGACTTTAAAAGTGCTTATCAACGAAGTCTGAAAGACCACTTGAAAATTCACACCGGAAAGCTGTTTGCTTGTGAAATATGCGCTCAGAAATGTACAACTCTGCAAAGTCTGAAACGACATATGGCAACTCACGACAGCTCAAAACAGTTCGGGTGTACAATTTGTGACTTCCGAAGTGCATATGAACACAATCTGAGAGACCACCTCAAAATTCATACCGGAACGCGACTGTTTACTTGCGGAATATGCTCTCAAAAATGTTTGACcaaggtaattttaaaacggCATATGAGAACTCATACCGGTGAAAAACCATTtatgtgtaaaatttgtgaattcAAAAGTGCATACAAGCAGAGCTTGCGGgatcatttaaaaatccataccGGAGAGAACCTCTTCGCTTGTGAAGTGTGCGCACGGGGATGTTCGACTAAAGGAATTTTGAAACGGCATATGATAGCACATGCTGGTGGGAAACAGTTTGCGTGTGAAATTTGCGACTTCAAATCTGCATatgaacataatttaaaataccatGTAAAAATCCACAATGGTGAAAAACTGTCTCGTACTTGTGAAATATGCTCCCGGACGTTTTCGAGCAAAAGCAGTTTGAAGCGGCATATGATAACTCATACGGGCGGAAATCACAATGGCCAGGTGTTTTCTTGTGGAATATGTTTGTGGAAATGTTCGGCCAAAGTCATATTAAAACGGCATATGACGGCAAATCATATGAACGAATTTGCCTGTAAGGCAAAATTGGTAGAACCCGCAGAGAAACTGTTTACTTGTGAGTTATGTTCCCGCATATGTGCAACCAAAGGAAGCTTCAAACGGCATATGGCAACTCATTCCGGCGGCAAACAATATGCGTGCAACATTTGCGACTTCAAGAGTGCATATGAACATAATTTCagaaatcatttaaatattcacaCTCGGGAGAAGCTGTTTGCTTGTGAAATATGCCCTCGGGAGTGTTCGAGCGAAATGACCTTGAAACGGCATATGACAACTCATTCGGGCTTAAAACAGTTTGCGTGCGAGATTTGCGACTTTAAAACTGCATATAAGCAAAGTTTGAGCGACCACTTGAAACTCCACACCGGGAAGGATCTGTTTACTTGTGAAATGTGTTCTCGGAAATGCATTACCAAGGAAGGTCTAAAACGGCATATGACGACTCATACCAACGACAAACCGTACGTCTgcgaaatttgtgattttaaaagtgCGTATAAACAAAGCTTAAGGGACCATTTAAAAATCCACACTGGAGACAAACCGTTTGCTTGTGAAATATGCGACCGGAAATGCTTAACCAAGGTAATTCTAAAACGGCATATGCGAACTCACACCAACGAAAAGCCTTTCGCGTGCGATGTTTGTGACTTTAAAAGTGCCTACAGGCAAAGCTTGAGAGACCATTTGAAAACTCATACCGGAGAGCAATTGTTTCTTTGTGAAATATGCGCCCGCAAATGTTTAACCAAAATGAGTCTAAAACGGCATATGTCCACTCATACCGGCGCGAAACCCTTTGCTTGTACAGCTTGTGACTTTAAATGTGCGCGTAAAGATAATCTGATTTGCCATTCGAAAATTCATAGCGGCGagaaaaatatgatttaa
- Protein Sequence
- MEEVVLSEEKYQVKQEIEEDVTFNLEDLHHSIDIKEEVPVEVVSLEIRQPDIKPFACTICAFKSSRKGSLNDHMKIHTGEKPFTCEICAHKFRTQGNFKRHMISHGHRELHECDVCDYKCTVKEFFNRHKKSHSDEQQFECSVCAQKCLSKGALNRHMVKIHSGERPYVCEICDFKSAYKQSLRDHLKVHNGEKYFACEICAHKCLNKSILKQHIMATHTDVKPFACTLCDFKSAYQRSLKDHLKIHTGKLFACEICAQKCTTLQSLKRHMATHDSSKQFGCTICDFRSAYEHNLRDHLKIHTGTRLFTCGICSQKCLTKVILKRHMRTHTGEKPFMCKICEFKSAYKQSLRDHLKIHTGENLFACEVCARGCSTKGILKRHMIAHAGGKQFACEICDFKSAYEHNLKYHVKIHNGEKLSRTCEICSRTFSSKSSLKRHMITHTGGNHNGQVFSCGICLWKCSAKVILKRHMTANHMNEFACKAKLVEPAEKLFTCELCSRICATKGSFKRHMATHSGGKQYACNICDFKSAYEHNFRNHLNIHTREKLFACEICPRECSSEMTLKRHMTTHSGLKQFACEICDFKTAYKQSLSDHLKLHTGKDLFTCEMCSRKCITKEGLKRHMTTHTNDKPYVCEICDFKSAYKQSLRDHLKIHTGDKPFACEICDRKCLTKVILKRHMRTHTNEKPFACDVCDFKSAYRQSLRDHLKTHTGEQLFLCEICARKCLTKMSLKRHMSTHTGAKPFACTACDFKCARKDNLICHSKIHSGEKNMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -