Clat018645.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:5129315-5132014[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.16 8.3 7.8 0.4 2 23 30 50 29 50 0.95 2 22 0.47 25 6.4 11.8 1 23 57 79 57 80 0.96 3 22 0.023 1.2 10.5 0.5 1 23 85 108 85 108 0.96 4 22 0.011 0.59 11.5 1.3 3 23 116 137 114 137 0.95 5 22 0.0022 0.12 13.7 0.5 1 23 143 166 143 166 0.94 6 22 0.00025 0.013 16.7 2.1 2 23 171 192 170 192 0.97 7 22 0.00097 0.05 14.8 0.2 2 23 199 220 198 220 0.95 8 22 0.0046 0.24 12.7 1.5 1 23 226 248 226 248 0.93 9 22 0.00045 0.023 15.9 1.1 1 23 254 276 254 276 0.98 10 22 6.5e-06 0.00034 21.7 5.2 1 23 282 304 282 304 0.96 11 22 6 3.1e+02 2.9 0.5 1 9 310 318 310 319 0.91 12 22 2.7 1.4e+02 4.0 0.7 5 23 372 389 369 389 0.84 13 22 0.00035 0.018 16.2 0.8 2 23 397 418 396 418 0.96 14 22 0.0014 0.075 14.3 2.2 1 23 424 447 424 447 0.97 15 22 0.0036 0.18 13.1 2.3 1 23 453 476 453 476 0.95 16 22 0.00083 0.043 15.0 0.5 1 23 482 505 482 505 0.96 17 22 0.00012 0.0065 17.6 0.9 2 23 510 531 509 531 0.97 18 22 6.6e-06 0.00034 21.6 1.7 2 23 538 559 537 559 0.97 19 22 5.4e-05 0.0028 18.8 2.0 1 23 565 587 565 587 0.96 20 22 6.7e-05 0.0035 18.5 1.9 1 23 593 615 593 615 0.98 21 22 1.5e-05 0.00078 20.5 5.5 1 23 621 643 621 643 0.97 22 22 0.014 0.72 11.2 3.5 1 23 649 671 649 671 0.97
Sequence Information
- Coding Sequence
- ATGTTCGTTAAATCAGAATTAGTCCCGATGGATCTCGACGAATGGGTTAAAAGCCTTCAATTGGTTCAcgaaccaaattttattatcagttGTGTAATATGTAATCGATTATTTATGATTAAGGAATTAAATCGACATATTAAATCCCATCAAGACGTATCATATCGATTTAAGTGCGATGTTTGCGGACATTTTTGTTCCTCAACGAGCACTCTATGCTATCATAAAAAAAGACATCATTCTCAAAGTAGACATACATGCCGAATTTGCCTTAAGGAGTTCATTTACGCTCGTGTGTTAAGGGACCACATCGACACTGTTCATGCTGTGGAAAAACCATGGTTTTGTGTTATATGTCAGcattcctttaaaattaagaaagatTTAGTTGGTCATATGCGGCTCAGACATTCCAGTGGCGGACCACATAGATGCGATTTTTGCGATAAAGCATATCCCATTGCGTCCATGTTAAAACAGCACTACCAAGCTGCTCATTCCATCAGTACAGAATGtacaatttgcaaaaaaatgttttcgagCTATTATTATATGCAACAGCACAAAAAGGTTCACCAAGAACTTGTCCATATTGAGTGTCCAGtttgcaagaaaatttttaacaacatcGCCACGTTTAAACGACATTCCATCGTTCATGTGGAGAAACAGAATTTTCTGTGCGAATTGTGCGGAAAGCATTTATCTTCCAAAACTAGTTTGAGGGACCATAATTTGATTCATTCTGGCATTAAACCATTCGAATGCCATGATTGTGGAAGtctgtttaataaaaaaggttCCTTACGCACTCACGTCTTGGTTCATTCTGGGGCAAAACCTCATTGCTGTTCAACTTGTGGGAAGAAATTTACCCAAAGAAGTACATTGGTCATTCACATGAGAATTCATACCGGCGTAAAGCCGTACAAATGCGAGTTTTGCGATAAAGCgttGCTTGTACCGAAACCgtcagaaaatgaaaaatcactTGGATTGCTTCTGCAAAATTCCAATACGTTAATTAAATCAGAATTAGTCCAAATCGATCTCCAAGAATGGGTTAAGAGTCTTGAACTGGCCCACGAACCCAATTTTATTATCAgttgtataatatgtaatcgACTGTTTATGATTAAGGAATTAAATCGACATATTAAATCTCATCAAGATGTAACACAGCGTTTAACATGTGATGTGTGCGGAAAAATGGCTTCATCACAGAGAAATTTTAGTCGTCATAGAAAAGGACACGATACTCCAAGGAATCATGAATGCGAAATTTGCCTGAAGAAGTTCAGATATGCCCATGTGCTAAGAGACCACATGGACACCGTGCATACCGtggaaaaatcatttttttgtgATATATGTCAGCAttcgtttaaaattagaaaaactttaattatgcATATACGGGCGAGACACTCCAATGGTGGACCACATAGATGCGATCTTTGTGATAAAGCATATCCAATTGCGTCCATGTTGAAACAGCACTATCAAGTTTCTCATGCTATAAGTTCCGAATGTACCATTTGCAACGAagtgttttcgagttattactACATGCAGAAACATAAAAAGATTCATCAAGAACCTGTTCATATTGAGTGCCCCACCTGTAAgaagatttttaataacaaaactaCGTTTAAACGGCATCTCCGGGTTCATGGCGTTAAACAGAAGTATATGTGTGAATTGTGCGGAAAACATTTTACTTCCAGAACAAGCTTGAGGGACCATAGTCTAATTCATTCTGGTATTAAACCGTTTGAATGCCATGATTGTGgtaataagtttaataaaaaaggtaCCTTACGCACGCACGTCTTGGTGCACTCTGGGGGAAAACCTCATTGTTGTCCAACTTGCAAGAAGAAATTCACCCAAAGAAGCACTTTGGTCATTCACATGAGGATTCATACAGGTGAAAAGCCTTACAGTTGTGAATTCTGCGATAAAGCGTTTATTAGccgaaatttattgaattgccATAAAAGAAATCATCGATATTAG
- Protein Sequence
- MFVKSELVPMDLDEWVKSLQLVHEPNFIISCVICNRLFMIKELNRHIKSHQDVSYRFKCDVCGHFCSSTSTLCYHKKRHHSQSRHTCRICLKEFIYARVLRDHIDTVHAVEKPWFCVICQHSFKIKKDLVGHMRLRHSSGGPHRCDFCDKAYPIASMLKQHYQAAHSISTECTICKKMFSSYYYMQQHKKVHQELVHIECPVCKKIFNNIATFKRHSIVHVEKQNFLCELCGKHLSSKTSLRDHNLIHSGIKPFECHDCGSLFNKKGSLRTHVLVHSGAKPHCCSTCGKKFTQRSTLVIHMRIHTGVKPYKCEFCDKALLVPKPSENEKSLGLLLQNSNTLIKSELVQIDLQEWVKSLELAHEPNFIISCIICNRLFMIKELNRHIKSHQDVTQRLTCDVCGKMASSQRNFSRHRKGHDTPRNHECEICLKKFRYAHVLRDHMDTVHTVEKSFFCDICQHSFKIRKTLIMHIRARHSNGGPHRCDLCDKAYPIASMLKQHYQVSHAISSECTICNEVFSSYYYMQKHKKIHQEPVHIECPTCKKIFNNKTTFKRHLRVHGVKQKYMCELCGKHFTSRTSLRDHSLIHSGIKPFECHDCGNKFNKKGTLRTHVLVHSGGKPHCCPTCKKKFTQRSTLVIHMRIHTGEKPYSCEFCDKAFISRNLLNCHKRNHRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -