Clat022597.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis lateralis
Gene Symbol
-
Assembly
GCA_963170105.1
Location
OY720628.1:36325913-36337583[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00038 0.02 16.1 3.5 1 23 134 156 134 156 0.98
2 19 5e-06 0.00026 22.0 0.6 1 23 162 184 162 184 0.98
3 19 0.00014 0.0073 17.5 0.2 3 19 192 208 190 210 0.95
4 19 0.00044 0.023 15.9 1.9 1 23 262 284 262 284 0.95
5 19 5.7e-05 0.003 18.7 0.7 3 23 292 312 290 312 0.98
6 19 0.023 1.2 10.5 3.1 1 19 318 336 318 338 0.96
7 19 3e-05 0.0016 19.6 2.1 1 23 390 412 390 412 0.98
8 19 5.8e-06 0.0003 21.8 2.3 3 23 420 440 418 440 0.98
9 19 0.00047 0.024 15.8 2.6 1 23 446 468 446 468 0.99
10 19 0.0025 0.13 13.5 1.6 1 23 474 496 474 496 0.99
11 19 4.1e-06 0.00021 22.3 2.0 1 23 502 524 502 524 0.99
12 19 0.0026 0.13 13.5 2.0 1 23 530 552 530 552 0.97
13 19 0.00047 0.025 15.8 3.9 1 23 558 580 558 580 0.98
14 19 8.5e-06 0.00044 21.3 1.3 1 23 586 608 586 608 0.98
15 19 0.00013 0.0066 17.6 2.7 1 23 614 636 614 636 0.99
16 19 0.00015 0.008 17.3 5.1 1 23 642 664 642 664 0.99
17 19 9.6e-06 0.0005 21.1 0.8 1 23 670 692 670 692 0.98
18 19 0.0018 0.092 14.0 5.6 1 23 698 720 698 720 0.98
19 19 0.043 2.2 9.6 0.5 1 23 726 748 726 748 0.98

Sequence Information

Coding Sequence
ATGGACCGGGAGATACTTTtggaagaatttaataaatttgaaaaaagcgTGAATGGTTTGCGAGCTTCCAGTGATGGATATAACGATGGCGAAATGGAGACCATGGAAGTGGAGTTAGAAGAATTCCATCATTccattcatattaaaaaagaagataTTAGTTTAGAAAATCAACAGGATAACAACGAGGAAACTCCGAGCCATTCCCAAATTAAACTGGAAGAAATTGAAGTTAAGTTAGAAGATCTGCATCATTCCatcgacattaaagaagaTCTTTCGGTACTGGAATTTCAAGCTGATGGAGAATACAAAACAGAAACGGGcaagaatttgtttaaatgtcCTCAACGGGGAAGCTTAAAAAAGCATTTGATCGTTCGTACCGGCCTGAAGCCGTTCGAATGTGAGCAGTGTCCGTGCAAATTTGCTCGGAAGGAAAGCCTAAAACTTCATTTCAAAACGCACTCTGGCGACAAACCGTTTAGGTGTGAAAGCTGTGGATATCAATTTGCTCGTAAAGTAGATTTAACAAGACATGTAAGAATTCACACCGGCGAGCGACCTTTCGGCTGTGAGATTTGCGGTCAGAAATTTTCCCGAAAAGAACAATTGAAAGCTCATGAAACTCCAAGTCAGGTGGACGGCGACACCGAAATTAAGATTGAAGATATGGACATCAAGGAAGAACTTTTGCATCATTCCATTGACATAAAAGATGAGCCGTCGATGATGGAATATCAAGTGGATACGGAATGCAAGGAAGAAGTTAATCGGAAGCAGTTCTTATGTGAAATTTGTTCGTATAAGAGTGCACGTAAAGAACATTTAATGAAACATTTAAGAATCCACACCGGGGAGAAGCCTTTCGGCTGTAACatttgtgatttaaaatttacatataaagAAGGTTTAAACAGTCATTTGAAAACTCATGAAGACGTCAAACCGTTTCAGTGTGAATTTTGTGAATATAAATGTAGACGGCAAAGACAACTCAAAGTGCACGAAACTCCAAGCGATCCTGATGGCTACAccgaaattaaaatagaagaaaTAGACATCAAGGAGGAAGTTTTACATCATTCCATCGACATAAAAGAAGAGCCGTCGATGATAGAATTTCAAGTGGATACGGAATGCAAAGTGGAAATAAACCTGAAGCCGTTCTCGTGCGAAATTTGTCAGTATAAATGTGCTCGTAAAGgagatttaaataaacatttaagaaTCCATACAGGGGAGAAGCCTTTCGGCtgcaaaatttgtgattttaaatttacacgtAAGGAGAGTTTAAAAAGTCACTTAAGAACTCATCAAGGTGACAAACCATTTAAGTGTGAATTTTGTGAATACAAATGTGGACGTAAAGGACAGCTCCAAGTGCATTTGAGAATTCATACTGGCGAAAAACCATTCACTTGCGAACTTTGCGATTACAAATCGGCACACAAAGAAAGCATCACAATTCACCTAAGAACTCATacgggcgagaaaccgtttacGTGTgaattttgcgattttaaatttgtgcgCAGAGGGGACTTAAATAAACATCTAAGAACTCACACAGGGGAGAAACCATATGCTTGtaatatttgtgattttaaatgtgCTCGTCACGAAGGCTTAAAAAGTCATCTACTCATTCATACAAACGAGAAACCATTTAGATGCGAATTTTGCGACTATAGAAGTGCACGGAAAGAACATTTGAAACAGCATTTGAGTACTCATtcaggcgagaaaccgtttcagtgcgaaatttgtgactataaatgtGCACGCAAAGGAGATTTAAATCAgcacataaaaattcattccaaCGAGAAACCTTATACTTGCTGGATCTGCAACTTCAAATGCTCACGTAAGGGAGGCTTGAACACTCATTTAAGAATGCATACGGGAGAAAATCTGTATacgtgtgaaatttgtaaactGAAATGTGCACACAAAGGAAACTTTGAAAGACATTTAAGAACCCATtctggcgagaaaccatttatgTGTGATATTTGCGACtataaatttgcacaaaaAGGAGATTTAGACCGGCATTTTCGAACTCACacgggggaaaaaccgtttaCGTGTGAAATTTGCAACTATCGGTGTGGACGTAAGCATAGCTTAAAACTGCATTTACGACTTCATGAAGGTGGAGATCCATTTATGTGTGAAACTTGCGAATTTAAAGCTGCAGATGAAGAAAGCTTCcaacaacatttaaaaactcatgTTGACGAGAAACCTATTGCGTTATGA
Protein Sequence
MDREILLEEFNKFEKSVNGLRASSDGYNDGEMETMEVELEEFHHSIHIKKEDISLENQQDNNEETPSHSQIKLEEIEVKLEDLHHSIDIKEDLSVLEFQADGEYKTETGKNLFKCPQRGSLKKHLIVRTGLKPFECEQCPCKFARKESLKLHFKTHSGDKPFRCESCGYQFARKVDLTRHVRIHTGERPFGCEICGQKFSRKEQLKAHETPSQVDGDTEIKIEDMDIKEELLHHSIDIKDEPSMMEYQVDTECKEEVNRKQFLCEICSYKSARKEHLMKHLRIHTGEKPFGCNICDLKFTYKEGLNSHLKTHEDVKPFQCEFCEYKCRRQRQLKVHETPSDPDGYTEIKIEEIDIKEEVLHHSIDIKEEPSMIEFQVDTECKVEINLKPFSCEICQYKCARKGDLNKHLRIHTGEKPFGCKICDFKFTRKESLKSHLRTHQGDKPFKCEFCEYKCGRKGQLQVHLRIHTGEKPFTCELCDYKSAHKESITIHLRTHTGEKPFTCEFCDFKFVRRGDLNKHLRTHTGEKPYACNICDFKCARHEGLKSHLLIHTNEKPFRCEFCDYRSARKEHLKQHLSTHSGEKPFQCEICDYKCARKGDLNQHIKIHSNEKPYTCWICNFKCSRKGGLNTHLRMHTGENLYTCEICKLKCAHKGNFERHLRTHSGEKPFMCDICDYKFAQKGDLDRHFRTHTGEKPFTCEICNYRCGRKHSLKLHLRLHEGGDPFMCETCEFKAADEESFQQHLKTHVDEKPIAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-