Clat022779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis lateralis
Gene Symbol
-
Assembly
GCA_963170105.1
Location
OY720628.1:38466591-38470748[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.062 3.2 9.1 7.8 1 23 116 139 116 139 0.93
2 22 2.2e-05 0.0012 20.0 2.9 1 23 145 167 145 167 0.99
3 22 0.00026 0.013 16.6 3.7 1 23 173 195 173 195 0.99
4 22 0.0014 0.071 14.4 0.7 1 23 201 223 201 223 0.97
5 22 0.00051 0.027 15.7 3.7 1 23 229 251 229 251 0.98
6 22 0.00064 0.033 15.4 4.4 1 23 257 280 257 280 0.95
7 22 0.00012 0.0062 17.7 0.1 1 23 286 308 286 308 0.98
8 22 9.9e-06 0.00051 21.1 2.7 1 23 314 336 314 336 0.99
9 22 0.00044 0.023 15.9 3.6 1 23 342 364 342 364 0.98
10 22 4.2 2.2e+02 3.4 0.0 2 19 371 388 370 390 0.91
11 22 0.085 4.4 8.7 3.1 1 23 443 465 443 465 0.96
12 22 2.2e-05 0.0011 20.0 5.6 1 23 471 493 471 493 0.99
13 22 8.5e-05 0.0044 18.2 1.3 1 23 499 521 499 521 0.99
14 22 0.00082 0.042 15.1 0.6 1 23 527 549 527 549 0.97
15 22 2.5e-05 0.0013 19.8 1.9 2 23 556 577 555 577 0.97
16 22 0.00015 0.0077 17.4 3.2 1 23 583 605 583 605 0.99
17 22 0.00011 0.0059 17.8 1.9 1 23 611 633 611 633 0.99
18 22 0.00026 0.014 16.6 6.5 1 23 639 661 639 661 0.99
19 22 0.00017 0.009 17.2 1.9 1 23 667 690 667 690 0.96
20 22 0.00032 0.017 16.3 0.4 1 23 696 718 696 718 0.98
21 22 3.8e-05 0.002 19.3 2.4 1 23 724 746 724 746 0.99
22 22 0.00017 0.0087 17.2 0.6 1 23 752 774 752 774 0.98

Sequence Information

Coding Sequence
atgttgacGAATCGTTGGAGATATCTGGTCTCCCGTTCCCTTCGATCAATCGTAAATTCGAGTATTTACTGTGATATTGAAATTCTGTTACCCGGGCAGAATCTGATCGGGCTAATACAATTGTTCAGCGAGGTCTTCGACACGGCAACAAAATATAGGATGCTGATTATTAGTTTGTTACAGGATTCCTCGTGGGATTCGAGTAACTACGTACACATTAAGATAGAAGATGAAGTGGAAGTGAAGGTGGAAGATTTACACCATTCCATCGACATCAAAGAAGAGCCTGTGTTTATAGAACCTAAGccggaaataaaatttaaaccgcAAACCAGTCGGAAATCATTTGCGTGCAGATATTGTGACCATAAATGTGTACATAAACGCAATCTAAAGCGACACGTCGTGAAAACTCATTCTCACAAGAAGCCGTATCAGTGTGAAATGTGTGGCTATAAATGTGGAACGAACACTTCATTGAAATCGCATATAAGAACTCACACTGGTGAGAAACCATACACTTGTGCggtttgtaattataaatgcgCACACAAGGCCAGCTTGCGCATTCATTTAAGAACCCACACGGGGGAAAAACCGTATGCCTGTAAAATATGTGACTATAAAGGTTTGACGAGCACCAATCTGAAATCGCACATCAGGACCCACACCGGGGAGAAACCATTTACCTGTGAACtttgtgactataaatgtGCAACGGGCGCCCATTTGAAATCCCACATGAGAAGTCAtaccggggaaaaaccgtaTACATGTGAAATCTGCGATTATAAGTGCTCGCATAAGGGAAACTTACGAGTTCACGCCATCGTTTGCCATACGGGCGACAAAAAGTTTCcgtgtaaaatttgcaattacaaagCTGTAACTAAGGgagatttaataattcatttgaGAACTcacactggcgagaaaccgtaTACATGTGAAATTTGCAACTACAAATGTTCGCAGAAAGGCAGCTTGAATATTCACTTGAGAACTCATACCGGGGACAAGCCGTTcacttgtaaaatttgtagttataaATGTGCATCGAAAGGACAGTTAAATTCTCACTTGAAAAGTCATTCGAACGATAAACCGGTTGTgtgcaaaatttgcaatttcaaagcCGGAAGTAAAGCAGATTTACTTATTCACGAAACTCCATGCGATTCAAGTAATtacttccaaattaaaatagaagagGAGGTGGAGGTGAAGTTGGAAGATTTACATCACTCCatcgacattaaagaagaaactGCGGTTATAGATTCTCTTCCGGACAGGAAATATAAAGCAGAAACCAGTGGTAAACCATTTGCTTGTAAAATCTGTGATAATAGGTATACATGTAAGCGCAACTTGATTCGGCATAACATAACTCATTCGGATAAGACTCCGTATCGGTGCGAAATTTGCGGACACAATTGCTCGCATAAGGCAAACTTGACTATCcatttaagaactcatacaggcgagaaaccgtACAAGTGTGAACTTTGTGACTACAAAAGTGCGACTAATACCAGCTTAAAGTTGCATATGAGAaatcataccggcgagaagccGTTCGTCTGTGagatttgtgattataaaagtCCGAGCAGCAGTCAATTGAAATATCATAAAGTAACGCATAATGGGGTGAAATCGCTTAAATGTGGAATCTGCGGGTATAAATGTGCGACTAACAGCACACTGAAATCTCACGTAagaactcataccggcgagaagccTTACACCTGTGcgatttgtaattataaatgtgCGCACAAGGCCAGCTTGCGAATTCACATACGAAGCCACACGGGCGAGCGACCGTTCACGTGTAAAATATGCGAATACAAAGCCACAACGAGCAGTAAGTTGAAATCGCACGTTCGGACTCACACCGGCGAGAAGCCGTTCAGGTGTGACCTCTGCAACTACAGATGTGCAACCAACACTCATTTGAAATCGCACATGAGAAGCCATACCGGAGAGAAACCGTATCCCTGTGAGCTGTGCGACTATAAATGTTCGCATAAGGGCAATCTACGAATTCATTTGATTGTTTCTCATACGGGCGAAAAGCAGTTTCCGTGTAAAACTTGCAATTACAAAGCCGTAACTAAGGGAGACTTGATGATTCACTTGAGAACCCACACAGGGGAAAAACCGTATACGTGTGAACTGTGTGACTACAAATGTTCGCAAAAGGGCAGCTTGAATATTCATCTTCGATCTCACACCGGCGACAAGCCCTTCGtttgtaaaatatgtagttataAAAGTGCTTCGAAGGGACAGTTAAATATTCATCTCAAAACTCATCAAGACAAAATTGCATAG
Protein Sequence
MLTNRWRYLVSRSLRSIVNSSIYCDIEILLPGQNLIGLIQLFSEVFDTATKYRMLIISLLQDSSWDSSNYVHIKIEDEVEVKVEDLHHSIDIKEEPVFIEPKPEIKFKPQTSRKSFACRYCDHKCVHKRNLKRHVVKTHSHKKPYQCEMCGYKCGTNTSLKSHIRTHTGEKPYTCAVCNYKCAHKASLRIHLRTHTGEKPYACKICDYKGLTSTNLKSHIRTHTGEKPFTCELCDYKCATGAHLKSHMRSHTGEKPYTCEICDYKCSHKGNLRVHAIVCHTGDKKFPCKICNYKAVTKGDLIIHLRTHTGEKPYTCEICNYKCSQKGSLNIHLRTHTGDKPFTCKICSYKCASKGQLNSHLKSHSNDKPVVCKICNFKAGSKADLLIHETPCDSSNYFQIKIEEEVEVKLEDLHHSIDIKEETAVIDSLPDRKYKAETSGKPFACKICDNRYTCKRNLIRHNITHSDKTPYRCEICGHNCSHKANLTIHLRTHTGEKPYKCELCDYKSATNTSLKLHMRNHTGEKPFVCEICDYKSPSSSQLKYHKVTHNGVKSLKCGICGYKCATNSTLKSHVRTHTGEKPYTCAICNYKCAHKASLRIHIRSHTGERPFTCKICEYKATTSSKLKSHVRTHTGEKPFRCDLCNYRCATNTHLKSHMRSHTGEKPYPCELCDYKCSHKGNLRIHLIVSHTGEKQFPCKTCNYKAVTKGDLMIHLRTHTGEKPYTCELCDYKCSQKGSLNIHLRSHTGDKPFVCKICSYKSASKGQLNIHLKTHQDKIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-