Clat022561.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis lateralis
Gene Symbol
-
Assembly
GCA_963170105.1
Location
OY720628.1:36127542-36132371[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0075 0.39 12.0 1.1 1 23 96 118 96 118 0.97
2 22 8.6e-05 0.0044 18.1 4.4 1 23 124 146 124 146 0.99
3 22 0.00077 0.04 15.1 1.7 1 23 152 175 152 175 0.97
4 22 6.2e-05 0.0032 18.6 0.7 1 23 181 203 181 203 0.98
5 22 2.8e-05 0.0015 19.7 2.5 1 23 209 231 209 231 0.98
6 22 0.0035 0.18 13.1 3.4 1 21 237 257 237 258 0.95
7 22 1e-05 0.00053 21.0 0.6 1 23 314 336 314 336 0.98
8 22 4.9e-05 0.0026 18.9 2.1 1 23 342 364 342 364 0.98
9 22 7.8e-05 0.0041 18.3 0.5 1 23 370 392 370 392 0.97
10 22 0.0023 0.12 13.7 0.3 1 20 398 417 398 420 0.94
11 22 0.00014 0.0073 17.5 1.8 1 23 426 448 426 448 0.99
12 22 8e-05 0.0042 18.2 1.3 1 23 454 476 454 476 0.99
13 22 4.8e-05 0.0025 18.9 2.6 1 23 482 504 482 504 0.99
14 22 5.6e-06 0.00029 21.9 1.3 1 23 510 532 510 532 0.99
15 22 0.00013 0.0067 17.6 2.6 1 23 538 560 538 560 0.98
16 22 0.00076 0.04 15.2 1.6 1 23 566 588 566 588 0.98
17 22 9.4e-05 0.0049 18.0 4.3 1 23 594 616 594 616 0.98
18 22 5.6e-05 0.0029 18.7 0.2 1 23 622 644 622 644 0.99
19 22 2.1e-06 0.00011 23.2 3.3 1 23 650 672 650 672 0.99
20 22 0.00085 0.044 15.0 1.0 1 23 678 700 678 700 0.96
21 22 0.0064 0.33 12.3 1.9 3 23 708 728 706 728 0.97
22 22 0.0021 0.11 13.8 2.8 1 23 734 756 734 756 0.97

Sequence Information

Coding Sequence
ATGAATAAGATGATATTTTCAGTGGAACTCGAAGAAAATGGGGACAAAGAAATGAAAACAGAAgatataaaacttgaagacctgCATCATTCGATCGACATCAAAGAGGAGACTTTAATTTCCGAATCTCAGCTGGAGCGGGAAGTACAGAATAGcagcaaaattaaaaccgaAGGCCTGAAAGACGAGAATACCAAGCATAATTTTGACTTCCGTAACTTCGTTGATATAAAAGAAGACACTTCGGTCAACGAATCTCCACTCGGAGAACCTACAAAAAAGCGGTTTTCGTGTTCGCTGTGTGCTAATACTTTTGCGTTCAGAGTTTCTTTGAggaaacatttgaaattacacACCGGGGAGAAGCCTTTTACCTGTGAAGTTTGCTATTATAAATGTTCCCGGAAGGATAATTTGGATCGTCATTTACGAACGCACActggcgaaaaaccatttgagtgtaaaatttgcgattttaaatgtgTGAACTCGCCAACCCTGAAAAAGCATGTAATGGTAACTCACACTGGTGAGCAACCATTTTCCTGTGAAATTTGCGGTTACAAAAGTACTTTGAAAGAAAGCTTGAAAATTCATTTGCGCACTCACACCGGCGAAAAACCTTTTAACTGTGAAATTTGCGGCTTCAAATGTTCGCAATCTTCGTCgttgaaaaatcatttaataacGCACacgggcgagaaaccattCGAGTGCAAATTGTGCAGCTTTAAATGTTCACAATCCTCGACTTTGAAAAATCACATGGAAAAGGAAACTCCAAATTTGAAGGACCGTGTGGAAATTAAAACCGAAGAAAGCTACATGGAATTGAAGTTGGAAGATTTACATCATTCCATCGACATAAAAGAGGAGACTCCAAATTTTGAATCGCCTCGGAAGGTGAGAAGATGTAAATCGAAATCAGGGAAAAAGTCGTTTGTATGTCCGATCTGTGGTTCTAAATGCGCACAGAAAGGAaccttaaaaattcatataagAACTCATAGCGGTTTGAAGCCGTTCTCGTGTGAAATATGCAACTATAAATGTGCTCGTAAAGATgccttaaaaaatcatttgctAACCCACACTGGAGAGAAGCGGTTTatgtgtgaaatttgtgattataaatgtgcCCGTAATGGAGATTTGAAGATTCATATGGTTATTCACAGTACCGAGAAGCCTTTTatgtgtgaaatttgtgactaCAAAAGTGCACGTAAAGATTCTCTGAAGAGTCATTTATGGATACATACCCGGGAGAAGCAGTTCACGTGTGAATTCTGTAATATGGAATGTGCAACCAGAggtagtttaaaaattcacataaGAACCCATACAGGCGAGAAGCCGTATACATGTGAAGTTTGTGAATATAAGTCTGCACGTAAGGGAACCTTgaagaaacatttaaaaactcacaCTGGCGAAAAACCATACACGTGcgatatttgtaattataaatgtgGATCCAAAGATGCCTTAAAAACACATTTAAGAACTCACACTGGGGAGAAACCGTACACGTGCGACATTTGTGACTACAAATCTGCACGTAAAGGAACTTTGAAGAAACATTTGAGAACTCACACTGGAGAGAAACCATTCATGTGCGAGATTTGCGACTACAAATGTGCACATCGAGGCAGCTTGAGCATCCACATCAGAACacatactggcgagaaaccattttcCTGCGAACTTTGTGAGTACAGATGTGCACAAAAAGCAGACTTGAAAATTCACAAAAGAGTTCAcaccggggaaaaaccgttttcATGTGAAATCTGTGACTACAGATGTGCACATAAAAGTAGCTTGAAAATTCACTACAGAATTCACACCGGCGAAAAACCTTTCACTTGTGATATTTGCGACTTGAAATATGCAGATAAAGgggttttgaaaattcactTGAGAACCCACACTGGCGAGAAGCCGTTTACGTGTAAAATTTGTCAGTATAAATTTGCTCAACAaggacatttaaaaatacatttaaggactcatactggcgagaagccgtttagttgtgaaatttgtaattataagtgTGCACGTAAGGGAGACTTAAAAATTCACTCGATAATTCATAGCGGCGAGAAGGCATTTGGGTGTGAATTTTGTGACTACAGATGTGCACGCAAacgagatttaaaaattcacttgACTGTTCACACCGGTGAGAAAGCCTTCGCTTGTGAATTTTGTGACTATAAAACTGCACATAAAGGTAgcttaaaatatcatttaaaaactcacacccgattgtcaaatactgaattaATACAGCAATAG
Protein Sequence
MNKMIFSVELEENGDKEMKTEDIKLEDLHHSIDIKEETLISESQLEREVQNSSKIKTEGLKDENTKHNFDFRNFVDIKEDTSVNESPLGEPTKKRFSCSLCANTFAFRVSLRKHLKLHTGEKPFTCEVCYYKCSRKDNLDRHLRTHTGEKPFECKICDFKCVNSPTLKKHVMVTHTGEQPFSCEICGYKSTLKESLKIHLRTHTGEKPFNCEICGFKCSQSSSLKNHLITHTGEKPFECKLCSFKCSQSSTLKNHMEKETPNLKDRVEIKTEESYMELKLEDLHHSIDIKEETPNFESPRKVRRCKSKSGKKSFVCPICGSKCAQKGTLKIHIRTHSGLKPFSCEICNYKCARKDALKNHLLTHTGEKRFMCEICDYKCARNGDLKIHMVIHSTEKPFMCEICDYKSARKDSLKSHLWIHTREKQFTCEFCNMECATRGSLKIHIRTHTGEKPYTCEVCEYKSARKGTLKKHLKTHTGEKPYTCDICNYKCGSKDALKTHLRTHTGEKPYTCDICDYKSARKGTLKKHLRTHTGEKPFMCEICDYKCAHRGSLSIHIRTHTGEKPFSCELCEYRCAQKADLKIHKRVHTGEKPFSCEICDYRCAHKSSLKIHYRIHTGEKPFTCDICDLKYADKGVLKIHLRTHTGEKPFTCKICQYKFAQQGHLKIHLRTHTGEKPFSCEICNYKCARKGDLKIHSIIHSGEKAFGCEFCDYRCARKRDLKIHLTVHTGEKAFACEFCDYKTAHKGSLKYHLKTHTRLSNTELIQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-