Clat022721.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis lateralis
Gene Symbol
-
Assembly
GCA_963170105.1
Location
OY720628.1:37716605-37723563[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 4.7e-06 0.00024 22.1 0.7 1 23 34 56 34 56 0.97
2 29 0.00089 0.046 15.0 1.1 1 23 62 84 62 84 0.98
3 29 0.00014 0.0073 17.5 2.7 1 23 90 112 90 112 0.98
4 29 0.016 0.84 11.0 7.8 1 23 118 140 118 140 0.99
5 29 0.0012 0.062 14.5 3.1 1 23 207 229 207 229 0.98
6 29 0.00012 0.006 17.7 5.9 1 23 332 354 332 354 0.99
7 29 0.002 0.1 13.9 1.0 1 23 360 382 360 382 0.99
8 29 0.0012 0.063 14.5 3.8 1 23 388 410 388 410 0.98
9 29 0.0014 0.071 14.4 1.6 1 23 416 438 416 438 0.97
10 29 0.00059 0.031 15.5 6.6 1 23 444 466 444 466 0.98
11 29 0.033 1.7 10.0 2.1 3 23 474 494 472 494 0.97
12 29 0.0063 0.33 12.3 9.3 1 23 500 522 500 522 0.99
13 29 0.0011 0.056 14.7 3.1 2 23 529 550 528 550 0.97
14 29 8.6e-05 0.0045 18.1 2.3 1 23 556 578 556 578 0.98
15 29 0.0025 0.13 13.5 1.2 3 23 586 606 584 606 0.97
16 29 5e-05 0.0026 18.9 3.8 1 23 612 634 612 634 0.98
17 29 0.00014 0.0072 17.5 0.5 1 23 715 737 715 737 0.98
18 29 0.0098 0.51 11.7 1.2 1 23 743 765 743 765 0.98
19 29 0.0079 0.41 12.0 0.2 3 23 773 793 771 793 0.96
20 29 7e-05 0.0036 18.4 1.8 1 23 799 821 799 821 0.99
21 29 0.0016 0.081 14.2 1.4 3 23 829 849 827 849 0.97
22 29 0.0012 0.064 14.5 2.9 1 23 855 877 855 877 0.98
23 29 1.2e-05 0.0006 20.9 2.8 1 23 883 905 883 905 0.98
24 29 7.2e-05 0.0037 18.4 2.4 1 23 911 933 911 933 0.98
25 29 0.038 2 9.8 4.4 1 23 939 961 939 961 0.97
26 29 0.0055 0.29 12.5 2.6 1 23 967 989 967 989 0.97
27 29 0.0054 0.28 12.5 1.3 1 23 995 1017 995 1017 0.98
28 29 0.0013 0.066 14.5 1.8 1 23 1023 1045 1023 1045 0.98
29 29 0.00078 0.04 15.1 2.2 1 23 1051 1073 1051 1073 0.98

Sequence Information

Coding Sequence
ATGGAAGATTTGCATCATTCCATCGAGATTAAAGAAGAAACTGCGGTTTTCGAAACCCAACCGGATGGAGAATGCAAACCCGACATAGCGGTGAGACCGTTTATATGTGATATTTGCGGTCTGAAATTCACGCAAAATGCATATTTGCAGAAGCATTTGAAAAATCACACTCGGGAGAGGCCgtttatttgtgaaatttgtggtttGAAATGTACGCAAAAGGAAATCCTGAAAGTTCATTTAAGAACTCACACGGGAGAGAAACCGTACTCGTGTGAATTCTGCAACTATAAGTGTTCACGCAAGGGAGCCTTGAAGGTTCATTTGAGAATACACACCGGCGAGAAGCCATTTACGTGTCAAcattgtgattataaatgcaGCCACCGAGGACGTTTACAGATTCACGCGAGAACTCACACAGACGAGAAACCGTTTACATGCGAAATCTGTTTGTTTCAGGACGCTCCTTGCTACGTTCAAATCAAGAAGGAAGAAGAGGAAGAAGTGAAAATCAAGTTGGAAGATCTGCATCATTCCATTGAGATTAAAGAAGAGACTTCAATTCTCGAAGTTCAAGTGGATGGGGAATGCAAAGCGAAGACCATCGGGAAGCCGTTTATATGTAAAACTTGCGGTTACAGCTGTCGGCAGAAAGGAATCTTGCAAACTCATCTAagaactcataccggcgagaaaccTGAACCGGATATGATTAGGGGAATATCTTCAGAGGAATTGTTAGAAAATGCCcgcaaagaaattaaaacggAAGATGTGAAGCTGAAAGATTTGCATGAGTCCATTGACATTAAAGATGAAACTTGGATTCCCATGGGGGTATTTTCGGAAGAAGAGACGGGTGTGGATATGAAGGTGGAAAATTTACATCACTCCATTTACGTTAAGGAAGAGACGACAACTGAGGAGAGCGAAGTCTGTAAACCAATTAAAAGTCGGGTAAAGAGCCGACAACTGGCGGAAGAtaaaccgtttgagtgtacAATGTGCGACTACACTTGTTCGCGGAAACTACACCTGAAGGATCACATACGGACTCAcaccggcgagaaaccatttaagtGCGAGATCTGCGATTTTAAGTCGGCCTATCAGCAGAGCCTGAAAGGCCACTTGCGCAGTCAtaccggggaaaaaccgtacGAGTGTAACATCTGCGATTTTAAGTCTTCTCATAAGCACACATTGAATGCTCATTTGCTGAGTCATacgggcgagaaaccgttcgaGTGTAAATTGTGCGATTATAAATCTCTCCGAAACGAAGATTTGAAACGGCATTTGCGGACTCACACCGGCGAGAGACCTTTcgagtgtaaaatttgcggttttaaattttctcgaaaaccaCATTTAAAATGTCATTTGCGGACTCACAGCGGGGAAAAGCCGTTTGGGTGCAGCACCTGCGACTTCCGGTCTTCGCATAAGCAAAGCCTGAAAGATCATATTCTGattcataccggcgagaagccATTTCAGTGCAAAATTTGCCATTACAGATGTTCGCATCGACGCAGCCTGAAAGATCATTTGCTAACTCATACCGGGGAAAAACCGCTCGAGTGCACGATTTGCGACTTTAAGTGTTCTCGTAGGCGCAGTTTGAAAGATCATTTACTAACGCAcaccggggaaaaaccgtaTGCCTGTAACGTTTGCTCGTATAAGTgttctcaaatttcaaatttgaaagttcATCTGCGAACCCATAGTTCCGAGAAACCTTTCGGATGCAACCTTTGCGATTATAAGTGTTCTTCCAAAGCCCTACTGAAAGTTCACTTATTAATCCACAGCGGTACCAAACCGTTTAAATGTAACGTTTGCGCTTATAAATGCTCGcaaaaatcgaatttaaatCGGCATTTACGAGGTCATCTCAACGGCAAACCAGTGAACTCGCAGGAAATTCCAAACAGCTGCACCCAAATTAAGTCCGAAGTGGAAGAACCGGAATTTGAAGTGTTCGATTTGCATCATTCCATCGACATTAAGGAGGAGACTGTAATTCTCAAATCTCAATCGGATAGAGAATGCAAAACCGAGCCAACCGAGAACTTCTCGTTGGAGGACTATAAATATGCAGATCGATTGAAAGTCCAACCTGGGGATAAACCGTATATATGTGGAATTTGTGGTTACGGTTGTAAACAAAAGGCAACGTTGGACATCCACTTGAGGACTCATACCGGTGAGCGGCCGTATACTTGTCATATATGCGGATATAGAGGTGCAACCAAAGAACGGGTGAAGATTCATTTAACAACTCATACCAACGACAAGGCGTTCGGATGTGACATTTGCGATTACAAATCTGCCCGAAAGGAACTTTTACGTAGGCATTCCATAATTCATCAAATCGAGAAGCCGTTCCGATGTGAGATTTGTGACGGCCGATTCAATCAAAAAGGTCATTTTGAAATCCATCTGAGAAGCCAtaccggggaaaaaccgtttgggtgtaatatttgcgattaCAGATGTATTCGTAAAGCCCAATTAACAATACACCTAACTTCTCACacgggggaaaaaccgttcTCCTGTGAACTGTGCGACTATAAATGTGCACGTAAAGAACTTTTACGAAGGCATTCGCTGACTCATAAAACCGAGAAACCGTTCTCGTGTAAAACTTGCGGCAACAAATTCACACAGagcgaaaatttcaaaattcatttaagaACGCATACCGGGGAAAAACCATTCGTATGCGAAATCTGCGGTTTCAAATGTATACAAAAaacctatttaaaaattcacctgaggactcatactggcgagaaaccgcACTCCTGTGAATTTTGCGACTACAAATGTGGACTGAAAGGAACTCTGAAGGTGCACTTAAGAACTCACACCGGTGAAAAACCTTTCGCATGTCAGTTCTGCGACTTTAAATGCGCCTACAAAGCAAGTCTGCAGATTCATTTAAAAACCCACACTGGAGATAAACCCTTTAGCTGTGAAATTTGCGGTTACAAGTGCAGGGTGAAggccattttaaatttacacttgAGAACTCATACCGGGGAAAAACCATTTTCCTGTGaattttgcgattataaatgtgctCGCAAAGGAAACTTGGGAATTCATGTGAAAACCCACACGGGCGAGAAGCCGTTTTCGTGCGAAATTTGCGGCTACAAATGTTTGCAAAAAGGAAATCTCAAAATTCACTTAAAAACCCATTCCGCTACAAAATGA
Protein Sequence
MEDLHHSIEIKEETAVFETQPDGECKPDIAVRPFICDICGLKFTQNAYLQKHLKNHTRERPFICEICGLKCTQKEILKVHLRTHTGEKPYSCEFCNYKCSRKGALKVHLRIHTGEKPFTCQHCDYKCSHRGRLQIHARTHTDEKPFTCEICLFQDAPCYVQIKKEEEEEVKIKLEDLHHSIEIKEETSILEVQVDGECKAKTIGKPFICKTCGYSCRQKGILQTHLRTHTGEKPEPDMIRGISSEELLENARKEIKTEDVKLKDLHESIDIKDETWIPMGVFSEEETGVDMKVENLHHSIYVKEETTTEESEVCKPIKSRVKSRQLAEDKPFECTMCDYTCSRKLHLKDHIRTHTGEKPFKCEICDFKSAYQQSLKGHLRSHTGEKPYECNICDFKSSHKHTLNAHLLSHTGEKPFECKLCDYKSLRNEDLKRHLRTHTGERPFECKICGFKFSRKPHLKCHLRTHSGEKPFGCSTCDFRSSHKQSLKDHILIHTGEKPFQCKICHYRCSHRRSLKDHLLTHTGEKPLECTICDFKCSRRRSLKDHLLTHTGEKPYACNVCSYKCSQISNLKVHLRTHSSEKPFGCNLCDYKCSSKALLKVHLLIHSGTKPFKCNVCAYKCSQKSNLNRHLRGHLNGKPVNSQEIPNSCTQIKSEVEEPEFEVFDLHHSIDIKEETVILKSQSDRECKTEPTENFSLEDYKYADRLKVQPGDKPYICGICGYGCKQKATLDIHLRTHTGERPYTCHICGYRGATKERVKIHLTTHTNDKAFGCDICDYKSARKELLRRHSIIHQIEKPFRCEICDGRFNQKGHFEIHLRSHTGEKPFGCNICDYRCIRKAQLTIHLTSHTGEKPFSCELCDYKCARKELLRRHSLTHKTEKPFSCKTCGNKFTQSENFKIHLRTHTGEKPFVCEICGFKCIQKTYLKIHLRTHTGEKPHSCEFCDYKCGLKGTLKVHLRTHTGEKPFACQFCDFKCAYKASLQIHLKTHTGDKPFSCEICGYKCRVKAILNLHLRTHTGEKPFSCEFCDYKCARKGNLGIHVKTHTGEKPFSCEICGYKCLQKGNLKIHLKTHSATK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-