Basic Information

Insect: Cantharis flavilabris
Gene Symbol: chn
Assembly: GCA_949152465.1
Location: OX424441.1:22792629-22801071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00093 0.059 14.9 0.7 1 23 262 284 262 284 0.98

2 7 0.0023 0.15 13.7 4.0 1 23 290 313 290 313 0.96

3 7 0.0036 0.23 13.1 4.2 1 23 412 434 412 434 0.99

4 7 0.35 22 6.8 0.1 1 23 438 461 438 461 0.95

5 7 0.00032 0.02 16.4 0.8 1 23 622 644 622 644 0.97

6 7 0.004 0.26 12.9 0.4 1 23 667 689 667 689 0.98

7 7 0.26 17 7.2 3.6 1 19 784 802 784 807 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00093	0.059	14.9	0.7	1	23	262	284	262	284	0.98
2	7	0.0023	0.15	13.7	4.0	1	23	290	313	290	313	0.96
3	7	0.0036	0.23	13.1	4.2	1	23	412	434	412	434	0.99
4	7	0.35	22	6.8	0.1	1	23	438	461	438	461	0.95
5	7	0.00032	0.02	16.4	0.8	1	23	622	644	622	644	0.97
6	7	0.004	0.26	12.9	0.4	1	23	667	689	667	689	0.98
7	7	0.26	17	7.2	3.6	1	19	784	802	784	807	0.81

Sequence Information

Coding Sequence: ATGGAGGTGGCAATGCCAATGACGGGCAATGCCATCGATTCGTACGAAGACATGTTTAAAGAAATTACTAGAAAATTATACGGAGAAGATGGATTGCCAGAATTTGTACCTACTGAACGTTTAACAAATTCCCAAGAAAGAAATTTAACCAACGTCGATTACGATGTCGAATCGTCCATGTTAAAACCCGAAGAACATTTAACTGCATTTGGTTTAGCCGCGCTAATGCAAAATGGTTTTCCACCTGCAGGAATATTAAATCCACCGTTTCAACAAACCAAACAGCCTACCCATCCTTGTGAGGATAAGTGGGTTATTAGTGAAGATAACTTGCAATGGACACATTCTAAAATTGCCAGTTATAATCCAGCTCAGAAGTTATTTAGATGTGCAGAATGCGATTGTGTTGGATACCTTCCTCGAGTAGCCGAACATTGGCTAGGAACGCATTCAAATTTAAGAGCTTTTCAATGCCCCCAATGCCCTTACGAAAGCGCGTGGGCACGCTGCGTTCGAATGCACCTAACCCGGCACCACAACGTGAGTACAGAAGAAACGACGGAAGCTTTACTTAAGAATAATCCAGTGCTTCACGAAATTACAAGATATTTACAAAGATTGAAATCTCGATTAGAAGTCAATTGCACTAAAACTCAAAGTACCACTCAAATATCGGAAGACTTTCAACCGACTGCAACAACCAACAATAACGCACGGCCCGTAACAAATCAACAAGTTATACCACCGCCACCTTCAGAACCAAATAACGCTTCGACTAAGCGATATAGTTGCACATATTGTCCATATGCAACAGATCGGAGAGATTTATTTACTCGACACGAAAATATTCATCGGGAAGAGAAACCATTTCAGTGTTACGTGTGCCAAAAACAATTCAACAGAGCCGACCACGTAAAGAAGCATTTTTTAAGGATGCACCGAGAACATCCGTACGATTTAAATCGGATTAGACGACACCCGCCAAAAAATGCTTCTGGTATGTCGTACTACCATAAGTATAATTCAAACGGCACTCCTACACAGTCACCCGAACCAGTTTCGAATAACGATTTGGCCTTAATGAGTAACTCTTTAACcattccaaataattttgggaACATCAGCAGAAACGTAAATAATTCGAGAACTATTAACAGTGCCGATTTAAAATCGGTAAATATGAAGCCTAACGTACTTGGAAAATCGTTGAACAAAAAAAAGGGAGAAAAACGTTTTACTTGTTGCTATTGTTCTTGGTCGGGAGTTGATAATTGGTGTTTAAAACGACACATGAACACCCACTTAAAACCGTTTATATGTGGTTTATGCGATTATAAGGCTGCTCGTTCAGAACGTTTAGCTACTCATGTATTAAAAGTGCATAATAAGAGAGCATGTGGAAAATGTACGTTTTTAGCTGACGATCCCGCACAACTGGTACTTCACCAACAGGAGCAACaTCCTTTAGACCAACGTAGTAATCGTTCCACTACAAATGTGTTACGCACTTCAACATTCAATAGCGCACCGATTATACCACCATCAACTTCATTTACGCAAAATCAATCCAATATTAAACCCTATGAGTTAAGTGCTGCTGCAGCCATTCTACAACATGGAAATCGTCTTCTACAAAATGATACCAAACCATGGAAATCGCACACACCAAAACAGCATGGTGCAGctagattatttaattatttagaagCAAGTGATAGTTCAGAACCAGAATGTGATTCAAGAGGTACGGAAGATATGAACAGAATAACAGCGAGTCATAGAATCCAATCGGATTTTCATGAGGCGGGGGATGTTGGTAGTCAGTTAGACGAACCAGATGCAGAAGACGTAGAACTTCCATTGTTCGTCTGTAAAATTTGTGGCTGTGAATTTGAGGACGATTCATCATTGGAAACGCATCAATTTATACATTGCCACAGTTCAACATCTCCCGCCAAAGCTGAGGACATCAAAGAGAACGTTAATCCAAAAAGACAGTACCAATGTTACgtttgccaaaatattttttctagtcAATCTGCTATAATGGAGCACATGACAAATCACTCTGTGATATCATATCAATGCTCTAGCAATAGTGCAGTTCAAGATAAGGAAAGTCAAAATAAACGTTCGAGGAAGCAgagttttccaaaaaaactgGTTGTGCCATTTTTAGGCAACGACGAGTGCAGCATTACATGGGATTCTAACGACAAACTTTGGCGACAAACtgTAACTCGTAAAGgctttttttgtaaatgttgTCGAAACAAACGCCTGAGTCAATTTCGTACTAAgggcaatttatttttacataaattatggAAACAATTGAATAATGGATATTTTCAATGTGAACATTGTAATCTTCGTTTTAAACATCGCTATCAATCAGTGCTTCATTCGAGTAGGGTACATATTACGAAACCGAAGTTAAAAAttgtttctgaaaaaattcaagtAGTGCCTACTAAAGAACCAATAATTCATCCAATTGTACCTGCTCCTGATGAAGcatctcaaaattttttaactcaTACTTTCACATCTGTACCTGATATTACCAATACATCTGCCAATGTACATAAACTAGGTATGTCATTTTTAGATCATCCATTTTTACATTCTAATTCTAGTATTAACGGGCACATGCCTATTATTATTCCTACTTTTCCTCCAAATTAA
Protein Sequence: MEVAMPMTGNAIDSYEDMFKEITRKLYGEDGLPEFVPTERLTNSQERNLTNVDYDVESSMLKPEEHLTAFGLAALMQNGFPPAGILNPPFQQTKQPTHPCEDKWVISEDNLQWTHSKIASYNPAQKLFRCAECDCVGYLPRVAEHWLGTHSNLRAFQCPQCPYESAWARCVRMHLTRHHNVSTEETTEALLKNNPVLHEITRYLQRLKSRLEVNCTKTQSTTQISEDFQPTATTNNNARPVTNQQVIPPPPSEPNNASTKRYSCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHPYDLNRIRRHPPKNASGMSYYHKYNSNGTPTQSPEPVSNNDLALMSNSLTIPNNFGNISRNVNNSRTINSADLKSVNMKPNVLGKSLNKKKGEKRFTCCYCSWSGVDNWCLKRHMNTHLKPFICGLCDYKAARSERLATHVLKVHNKRACGKCTFLADDPAQLVLHQQEQHPLDQRSNRSTTNVLRTSTFNSAPIIPPSTSFTQNQSNIKPYELSAAAAILQHGNRLLQNDTKPWKSHTPKQHGAARLFNYLEASDSSEPECDSRGTEDMNRITASHRIQSDFHEAGDVGSQLDEPDAEDVELPLFVCKICGCEFEDDSSLETHQFIHCHSSTSPAKAEDIKENVNPKRQYQCYVCQNIFSSQSAIMEHMTNHSVISYQCSSNSAVQDKESQNKRSRKQSFPKKLVVPFLGNDECSITWDSNDKLWRQTVTRKGFFCKCCRNKRLSQFRTKGNLFLHKLWKQLNNGYFQCEHCNLRFKHRYQSVLHSSRVHITKPKLKIVSEKIQVVPTKEPIIHPIVPAPDEASQNFLTHTFTSVPDITNTSANVHKLGMSFLDHPFLHSNSSINGHMPIIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00789839;
90% Identity: iTF_01293063;
80% Identity: -