Cfla003352.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424435.1:35123184-35124981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.066 4.2 9.1 2.5 1 23 134 156 134 156 0.97 2 13 0.36 23 6.8 0.4 3 19 222 238 220 241 0.93 3 13 0.17 11 7.8 3.1 2 23 254 275 253 275 0.95 4 13 1.2 79 5.1 0.8 3 23 294 315 292 315 0.91 5 13 1.8 1.1e+02 4.6 0.4 2 19 322 339 321 341 0.94 6 13 0.035 2.2 10.0 0.1 1 19 355 373 355 377 0.94 7 13 0.00083 0.053 15.1 5.3 1 23 382 404 382 404 0.98 8 13 7.4e-06 0.00047 21.5 0.5 1 23 410 433 410 433 0.97 9 13 6e-05 0.0038 18.7 2.4 1 23 439 461 439 461 0.98 10 13 0.00048 0.031 15.8 1.6 1 23 467 489 467 489 0.98 11 13 0.00033 0.021 16.3 6.9 1 23 495 519 495 519 0.99 12 13 0.00018 0.012 17.2 4.5 1 23 525 547 525 547 0.98 13 13 0.00036 0.023 16.2 7.4 1 23 553 575 553 575 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTTTCCTAGAAATACCGAAAGATATCAATAAAGTGTGTAGAACTTGTCTTAATGTTACGGAAGGAAATGACGAAAGTTTTAGCTATCATCTCGTATATGATAATCAGTTGACAAATATAACTACATTTTTTGAAAGCGTGACATCTCTAAAGGTTACAGTTGGCGATGGTTTACCAGAATCAATATGTACGGATTGTTATGAGTCGTTAGAAACCGCTTATTCTTATAAGAATCGTTGTCACTATTCGGAAGAGAAATTAAGAGttcttttagaaaaatgtaCTACAAGCGTAGAAATGGAAGAACTTCAAAATGGCACGGAATTAATCGAAAATGACATAAACGATTCTGTGATTGATGTCCCTGCTTCTTTAAAACACGAAGGTGAAGATTATAACTGTCTGCATtgttcttcaatttttatgtcaTATTATCAATTAAGCAAACATATTATTCAGCACAATGCCACTAAAACACTTTCAGAAAGGTTTTTAGAAAATACTAATGATGAATTTGAAGAACCTGATATTAATTTGGgtagagtaaatatattaaagtatATTTTAAAGCGCAAGCAAAGTAATCAAAATTGCACAGATACAACTATCGAATTAATGGAAGATGATAGTGATGAAATAAGTAAAACAGAAATTGATTGTAAGATTTGTcggcaaatattttttacaatggAAGACTTAAATGAGCACTCATGTGAGCCTACCGATTCCGAATCGGTTGAAGTATTTTATAAATCGTGCAGATTATgtgataaattattttcagatgcTTGCACTTtgtctttacattttttaaaacatgCTTTTATTTTACAAAGCACAAAAACTGTGAATATCGAAtctgaatttttgttttgtgaGGTTTGCGGTGAATTGTTTAATTGTCAGCCAAAGTTAAATCAGCATTATAATGATATACATGATGGCAAAAGGGTATGGACATGCAACGAATGTTGTACTACATTTATCACAGAATTGGAATTAATCAAGCATAACTTGCTTAATTGTTCGGTAGCACCAGTTACATTGGACACAAATTTTCCATGTGTTTTGTGCACTGAAATATTTACATCTAGAGAAGAATTGCTCAATCATTCGCCAGTACACTTAATGAAGAAATATTCTTGTAAGAAATGTTTTCTGTCATTCTGTACCCAAGACTCTTACAATtcacatttaaaaatacatcccggttttaaattttatgtttgccGCACTTGTGGTAAAAATTTAAGCACCAAGAGTTCTTTAAAAGTCCACATCAACAGTGTACACACTCtcaaattacttcacaaatgtACAACCTGTGGTAAAAGTTTTGCATCTGCCAATCGACTCAAGACTCACGAAAAAATTCACAgcactaataaaaaatttgtttgctctTATTGCGGACATAACGTTCACACGGTTGGTGACCTTAAAGTTCATATAAGAACTCATACGAGTGAAAGACCCTACaaatgtacatttttaaattgcgaAATGAGTTTCAAAACGTCCAGTCATCTGTGCACTCATGTCAGAAGACATTTAAAGATACGTAATTACAAATGCAAAATTTGTTCCTCCAAGTTTAGCACCAGTCACAGCTTAAAAATTCATCAAATGCAACATACTGGAGAACGACCACATACTTGTACCGTTTGCCttcaaaaatttagaagaaaatatcACTTGAAAGTTCATATGAAGCAGCATGCGAAATGTGAAAactaa
- Protein Sequence
- MEIFLEIPKDINKVCRTCLNVTEGNDESFSYHLVYDNQLTNITTFFESVTSLKVTVGDGLPESICTDCYESLETAYSYKNRCHYSEEKLRVLLEKCTTSVEMEELQNGTELIENDINDSVIDVPASLKHEGEDYNCLHCSSIFMSYYQLSKHIIQHNATKTLSERFLENTNDEFEEPDINLGRVNILKYILKRKQSNQNCTDTTIELMEDDSDEISKTEIDCKICRQIFFTMEDLNEHSCEPTDSESVEVFYKSCRLCDKLFSDACTLSLHFLKHAFILQSTKTVNIESEFLFCEVCGELFNCQPKLNQHYNDIHDGKRVWTCNECCTTFITELELIKHNLLNCSVAPVTLDTNFPCVLCTEIFTSREELLNHSPVHLMKKYSCKKCFLSFCTQDSYNSHLKIHPGFKFYVCRTCGKNLSTKSSLKVHINSVHTLKLLHKCTTCGKSFASANRLKTHEKIHSTNKKFVCSYCGHNVHTVGDLKVHIRTHTSERPYKCTFLNCEMSFKTSSHLCTHVRRHLKIRNYKCKICSSKFSTSHSLKIHQMQHTGERPHTCTVCLQKFRRKYHLKVHMKQHAKCEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273071;
- 90% Identity
- iTF_00273071;
- 80% Identity
- -