Cfla015735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis flavilabris
Gene Symbol
-
Assembly
GCA_949152465.1
Location
OX424437.1:4641342-4656857[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00043 0.027 16.0 3.8 1 23 82 104 82 104 0.99
2 10 9.4e-05 0.006 18.1 0.2 1 23 110 132 110 132 0.99
3 10 0.00051 0.033 15.8 5.2 1 23 138 160 138 160 0.99
4 10 0.00045 0.029 15.9 4.8 1 23 166 188 166 188 0.99
5 10 1.5e-05 0.00097 20.6 3.1 1 23 194 216 194 216 0.98
6 10 1.8e-05 0.0011 20.4 4.0 1 23 222 244 222 244 0.99
7 10 0.0002 0.013 17.0 0.8 1 23 266 288 266 288 0.97
8 10 0.00019 0.012 17.1 1.1 1 23 294 316 294 316 0.98
9 10 0.00057 0.037 15.6 0.5 1 23 322 344 322 344 0.98
10 10 6e-05 0.0039 18.7 1.4 1 23 350 372 350 372 0.97

Sequence Information

Coding Sequence
ATGCGACTGACCGTTTGtttatttggaatttattaTACTGTTATAGTCAAAACAGCAGTTTATAGGATACTTTTTTTACAGGACACTCCATGCCGTTCAGATAGTTACTGTTCCGAAATAAAGACGGAAGAagaaattgaattgaaattggAAGATCtgcatcattccatcgacatTAAAGAGGAAATTTCTGTTCTAGAATGTCAACAACATGTACTCGTACAACAAAAGAGCAGAAAATCGTTTACGTGTGAAATTTGTGGTCATCGATCTGCTCATTtgactaattttaaaattcatttaagaactcatactggcgaaaaaccgtatgTGTGCGAAATTTGTGACTATCAAAGTGGATATAAAGCCAGTTTAATTAGGCATTTAAGAACTCACACCGGGGAGAAGCCCTTCCgttgtgaaatttgtgactacAAATGTTCACATATCGACAGCTTTAAACTCCACATACGAACTCACACTGGGCTTAAATTGTTTACGTGTGAGACGTGTCAATATAAATGTGCCCGGAAAGGAGATTTCAACAGACATTTAAAGACGCATACAGGGGAGAAGCCGTTTAATTGTGATATTTGTGATTTTCAATGTACACGTAAGGGAGATCTAAACCGACATTTGAGGACCCACACCGGGGAGAAGCCGTTTACCTGCCTAATTTGTGATTATAAGAGTTCACGTAAAGAACACCTGAACAAGCATTTGAGAACTCATAATAAAGTCTTGCAATCGTACATAAATAAAGAAGATTTAGAAGGTCCCACTGGCAAGAAACCGTTTGCTTGCGAACTTTGTGACTTTAAATGCGCACAGAAAGGGGGTTTACAggttcatttaagaactcataccggggaaaaacccttTTCCTGCTCCGTTTGTGATTTTAAATGCGCACAGAAGGGGGGCTTAAAAGTCCACTTGAGAATTCATTCCAACGAGAAACCGTATGCTTGTGATTTTTGTGACTACAAATGCGCACAAAAGGCAGGTTTAATTGCACATCTGAGTACTCATACTGGTGACAAACCCTTTGCATGCGAactttgtgactataaatgcgCACAGAAAGGGAGTTTAAAGGCTCATTTAAAAACCCACACTGGGCTATCTCAGAGACAGACACCTCCAACTAGGCCTGGAGGACGGAGAGACACAAGCGGAGTACCGCAGGGTTCGGTGCTCGGGCCAATCCTGTGGAATGTGATGTACGACGGCATCCTGAGGTTGAAACTCTCCGATGAAGTGAAGATCATCGGGTTCGCGGACGACATTAACGTGGTCATTGCTGACTTCGACGGGGACATGCTTGCTGTTAAAGCAAACGAGGCAATAGAACTCATCGCCGCGTGGGCGAAGACCAGAGGTCTCGCGCTAGTCCCGGAGAAGTCCGAAGCCGTGGTAGTGTGCGGAAGAAGGCGGTCACCATCCATGGAGTGGTGGTGGACAGGCACCACCTGTGTAAGGCTAAGGTGCCTTAGGTGGTGCCTTACACAGGTGGTGTCTGTCCACCACTACTCCAAAGATGGTGACCTCTTTCTTCATGGTAATCGGGTAAACCTGATGATCTTCACTCCATCGGGGAGTTTCAACCTCAGGATGCCGTCGTACATCACATTCCACAGGATTGGCCCGAGCACCGAACCCTGCGGTACTCCGCTTGTGATGACGACATCCTCTTCTCCGTCCTCCAGGCCTAGTTGA
Protein Sequence
MRLTVCLFGIYYTVIVKTAVYRILFLQDTPCRSDSYCSEIKTEEEIELKLEDLHHSIDIKEEISVLECQQHVLVQQKSRKSFTCEICGHRSAHLTNFKIHLRTHTGEKPYVCEICDYQSGYKASLIRHLRTHTGEKPFRCEICDYKCSHIDSFKLHIRTHTGLKLFTCETCQYKCARKGDFNRHLKTHTGEKPFNCDICDFQCTRKGDLNRHLRTHTGEKPFTCLICDYKSSRKEHLNKHLRTHNKVLQSYINKEDLEGPTGKKPFACELCDFKCAQKGGLQVHLRTHTGEKPFSCSVCDFKCAQKGGLKVHLRIHSNEKPYACDFCDYKCAQKAGLIAHLSTHTGDKPFACELCDYKCAQKGSLKAHLKTHTGLSQRQTPPTRPGGRRDTSGVPQGSVLGPILWNVMYDGILRLKLSDEVKIIGFADDINVVIADFDGDMLAVKANEAIELIAAWAKTRGLALVPEKSEAVVVCGRRRSPSMEWWWTGTTCVRLRCLRWCLTQVVSVHHYSKDGDLFLHGNRVNLMIFTPSGSFNLRMPSYITFHRIGPSTEPCGTPLVMTTSSSPSSRPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-