Cfla015693.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:4436572-4437933[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.61 39 6.1 0.3 1 23 84 106 84 106 0.96 2 13 6.7e-06 0.00043 21.7 2.7 2 23 122 143 121 143 0.97 3 13 0.00026 0.016 16.7 1.6 3 23 151 171 149 171 0.98 4 13 3.9e-05 0.0025 19.3 3.0 1 23 177 199 177 199 0.99 5 13 0.00059 0.038 15.6 4.6 1 23 205 227 205 227 0.97 6 13 9.6e-06 0.00061 21.2 2.8 1 23 233 255 233 255 0.99 7 13 0.0001 0.0065 18.0 4.5 1 23 261 283 261 283 0.97 8 13 0.0059 0.38 12.4 6.4 1 23 289 311 289 311 0.99 9 13 0.0026 0.17 13.5 4.0 1 23 317 339 317 339 0.98 10 13 0.00019 0.012 17.1 5.3 1 23 345 367 345 367 0.98 11 13 0.00044 0.028 16.0 0.8 3 23 375 395 373 395 0.98 12 13 0.21 14 7.5 0.5 8 23 408 423 403 423 0.92 13 13 5.2e-05 0.0034 18.9 5.8 1 23 429 451 429 451 0.99
Sequence Information
- Coding Sequence
- ATGGCATTTTCAGATGATTTAACAGGTGGAAACAAAGCCATGATTAAGATCGAAGAGATGGATATCAAGCTAGAAGATCTACATCATTCcattgatattaaagaagagGCGGATCAAGTTTTCCAAACACAAATAAGTAAGAAACTGGAACAAGTCAAAATTCCAAGCCTCGTGAAGGTGGAACAATTGCCAAGTGCAACTGATCGTAGTCAGTTATTCTTTACGGAAACTTCAAGTTCCAAGTTGACATTCGCCTGTAGCATGTGCGAGTATAAAACTTACGAAGTGGTAAGTTTGGATCTCCATTTAAAGACTCACTCGGGTGCAAAGCTGTTGTCGAGTGAAACCTCTCAACGACAGATCGAATGTAACATTTGTGATTATAGATGTTCTCGAAAACAGCAACTAAAAGTGCATTTACGAACCCACacaggggaaaaaccgtttgggTGTAACATGTGCGATTACAAAAGTACCCAAAAGCGAACTTTGACAAtccatttacgaactcataccggggaaaaaccgttcgaatgtaaaatttgcgattttaaatgttccCAGAAGCAAAATTTGATTGGACATTTGCGGACCCAcaccggcgaaaagccgtttgaCTGCAGCTTTTGCGACTACAAAACTTCGCAAAAACGTACTTTGATAcatcatttacgaactcataccggggaaaaaccgttcgagtgtaaCATCTGCGATTACAAATGTTCGCAGAGGGAAGGCTTGAAAAGTCACTTACGGAcacatacgggcgagaaaccgcaCAATTGTCATATTTGCCAATCAAAATTTTCGGATAAAGGACAACTGCGGGTGCATTTACGGTCtcacaccggcgagaaaccgtttcaGTGTAATCTTTGCGATTATAGATGTTCTCACGGAGGTCAATTTAAAtatcatttacgaactcataccggggaaaaaccgtttgagtgcaacatttgcgattttaaatgttccTATAAGCAAAGCTTCAAAATTCATTTACTttctcatactggcgagaaaccgcaTAAGTGTGAAACCTGCGATTACGGATGTTATCGAAAAGAACAATTGAGAGTTCATTTgcgaactcatactggcgagaaaccgttcgGGTGCTACATTTGCGGTTACAAAAGTTCTCGGAAACGAACTCTGGTGACTCATATACAAACCCACACTAGTGTGAAACCATTCGGGTGCAAACTTggtaattataaatgttctcgaaGAACTTGTTTGAAATTGCAcatacgaactcataccggcgagaaaccgtttgagtgtcaCATATGCGATTTCAGATGTTCTCTGAGAGAAAATTTGAAAcgtcatttacgaactcatactaGCTAG
- Protein Sequence
- MAFSDDLTGGNKAMIKIEEMDIKLEDLHHSIDIKEEADQVFQTQISKKLEQVKIPSLVKVEQLPSATDRSQLFFTETSSSKLTFACSMCEYKTYEVVSLDLHLKTHSGAKLLSSETSQRQIECNICDYRCSRKQQLKVHLRTHTGEKPFGCNMCDYKSTQKRTLTIHLRTHTGEKPFECKICDFKCSQKQNLIGHLRTHTGEKPFDCSFCDYKTSQKRTLIHHLRTHTGEKPFECNICDYKCSQREGLKSHLRTHTGEKPHNCHICQSKFSDKGQLRVHLRSHTGEKPFQCNLCDYRCSHGGQFKYHLRTHTGEKPFECNICDFKCSYKQSFKIHLLSHTGEKPHKCETCDYGCYRKEQLRVHLRTHTGEKPFGCYICGYKSSRKRTLVTHIQTHTSVKPFGCKLGNYKCSRRTCLKLHIRTHTGEKPFECHICDFRCSLRENLKRHLRTHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -