Basic Information

Insect: Cantharis flavilabris
Gene Symbol: -
Assembly: GCA_949152465.1
Location: OX424437.1:33288135-33289529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.8e-06 0.00031 22.1 0.9 1 23 88 110 88 110 0.98

2 13 0.0028 0.18 13.4 1.5 1 23 116 138 116 138 0.98

3 13 6.6e-06 0.00042 21.7 0.3 1 23 144 166 144 166 0.97

4 13 0.00011 0.007 17.8 0.0 1 23 172 194 172 194 0.97

5 13 0.012 0.76 11.4 0.5 1 23 200 222 200 222 0.97

6 13 0.00052 0.033 15.7 2.4 1 23 228 250 228 250 0.98

7 13 0.00068 0.044 15.4 0.6 1 23 256 278 256 278 0.98

8 13 0.48 31 6.4 2.1 1 23 284 306 284 306 0.94

9 13 0.55 35 6.2 0.2 2 23 313 334 312 334 0.95

10 13 7.6e-06 0.00049 21.5 2.1 1 23 340 362 340 362 0.98

11 13 0.00036 0.023 16.2 3.6 1 23 368 390 368 390 0.98

12 13 0.056 3.6 9.3 2.5 1 23 396 418 396 418 0.98

13 13 0.00073 0.047 15.3 1.0 1 23 424 446 424 446 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.8e-06	0.00031	22.1	0.9	1	23	88	110	88	110	0.98
2	13	0.0028	0.18	13.4	1.5	1	23	116	138	116	138	0.98
3	13	6.6e-06	0.00042	21.7	0.3	1	23	144	166	144	166	0.97
4	13	0.00011	0.007	17.8	0.0	1	23	172	194	172	194	0.97
5	13	0.012	0.76	11.4	0.5	1	23	200	222	200	222	0.97
6	13	0.00052	0.033	15.7	2.4	1	23	228	250	228	250	0.98
7	13	0.00068	0.044	15.4	0.6	1	23	256	278	256	278	0.98
8	13	0.48	31	6.4	2.1	1	23	284	306	284	306	0.94
9	13	0.55	35	6.2	0.2	2	23	313	334	312	334	0.95
10	13	7.6e-06	0.00049	21.5	2.1	1	23	340	362	340	362	0.98
11	13	0.00036	0.023	16.2	3.6	1	23	368	390	368	390	0.98
12	13	0.056	3.6	9.3	2.5	1	23	396	418	396	418	0.98
13	13	0.00073	0.047	15.3	1.0	1	23	424	446	424	446	0.97

Sequence Information

Coding Sequence: ATGGATAAAGAAACACAGCCGTCTTGTAGTATTCATATTAAAACTGAAGAAAtggtaaatattgtaattaagaCGGAAGAAATTGACGATTTCGAAATTAAGACCGAAGGaacacaaaaagttgaaaatgaggATTTACATCAAGCAATTGCCattaaacatgaaaatttatgcgatattgaaagaaaaataaagattCTCAAGCAAAACAGCAGAATTAATTCTGCAATTTGTATAGAAGGTACTGCGGGTGACAAAAAGTTTACATGTGCTATTTGTGGTTACAAGAGTTCGCAAAGATCAAATCTGCGAACTCATCTAAAAATTCATACGGGAGAGAAATTGTTCTCTTGTgaattttgtgattataaaagtattttgaaaacaaGTCTACAGCTACACTTAAGGAcacataccggcgagaaaccattcgCCTGTGATATTTGCGATTATAGAAGTTCACGAAAAGCAAATTTGACAATTCACATAAAAATGCACActggggaaaaaccgtttgcgTGTGATATATGCGGTGTTCGATTTGCACGGAAGGCGGTGTTGGTAAATCACTTAAAAATCCATTcaggcgagaaaccgtatgtgtgtgaaatttgtgatcATAGAAGTTTACGGAAGGCGGATTTGGGAAGACATTTATTAACTCATTCTGGCGAGAAGCCCTTTGCGTGTGACATTTGTAAATATAAGTGTTCGACAAAAGGAGACATGGGAAAACATTTGAGGACCCATACGGGTGAGAGACCATATGCCTGTGAACTTTGCGATTACAAAGCTTCGGATAAAGGATGTTTGATGATTCATATAAAAACTCATACAGGTGAAAAATCGTTTGCGTGTGAACTGTGCGATTTCAAATGTTTACGAAAATCAGGTTTGACGAGTCATTCAAAGGCACATACAGGGGAAAAACCCCTGGTTTGCGAAATCTGTGGTTTTATATCTTCCTTAACGAGAGTTTTCCTAAACCATTTGAAAACCCACAGAGACAAGAAACCGTTTGTTTGTGAAGtttgcggttataaatgttCGAGAAAATCGTATCTCGATATTCATCTGAGAACCCATACGGGAGAGAAGCCGTTCATATGTGATATTTGTAAGTACGAGTGTTCGCGAAAGACAACGTTAGATAGgcatttaaaaactcatacgggcgagaaaccgtacgCATGCaaattttgtgattataaatgtgcagAGGGCACTCGATTGAAAATGCACATAAgaactcatacgggcgagaaaccttTCGCTTGTGCAACTTGCGGTTATAAAAGTACAGTAAAAAGAAGCTTGCAAActcatttaaaaactcatacGAGAGAGGAACTATTTGGCTCTGAAGTTTTTGATCACAAAATGGTGATgacataa
Protein Sequence: MDKETQPSCSIHIKTEEMVNIVIKTEEIDDFEIKTEGTQKVENEDLHQAIAIKHENLCDIERKIKILKQNSRINSAICIEGTAGDKKFTCAICGYKSSQRSNLRTHLKIHTGEKLFSCEFCDYKSILKTSLQLHLRTHTGEKPFACDICDYRSSRKANLTIHIKMHTGEKPFACDICGVRFARKAVLVNHLKIHSGEKPYVCEICDHRSLRKADLGRHLLTHSGEKPFACDICKYKCSTKGDMGKHLRTHTGERPYACELCDYKASDKGCLMIHIKTHTGEKSFACELCDFKCLRKSGLTSHSKAHTGEKPLVCEICGFISSLTRVFLNHLKTHRDKKPFVCEVCGYKCSRKSYLDIHLRTHTGEKPFICDICKYECSRKTTLDRHLKTHTGEKPYACKFCDYKCAEGTRLKMHIRTHTGEKPFACATCGYKSTVKRSLQTHLKTHTREELFGSEVFDHKMVMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271696;
90% Identity: iTF_00271651; iTF_00271650;
80% Identity: -