Cfla000685.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- zfh1
- Assembly
- GCA_949152465.1
- Location
- OX424435.1:6940220-6941352[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 0.94 11.2 6.5 2 23 50 71 49 71 0.96 2 11 0.00024 0.015 16.8 0.6 1 23 77 100 77 100 0.94 3 11 0.0003 0.019 16.5 2.6 1 23 107 129 107 129 0.98 4 11 0.00054 0.034 15.7 1.2 3 23 137 157 135 157 0.98 5 11 6.1e-06 0.00039 21.8 0.2 1 23 165 187 165 187 0.98 6 11 7.9e-07 5.1e-05 24.6 1.3 1 23 193 216 193 216 0.97 7 11 1.2e-05 0.00075 20.9 0.7 1 23 222 244 222 244 0.98 8 11 1.6e-05 0.001 20.5 1.7 1 23 253 276 253 276 0.98 9 11 0.0046 0.29 12.7 0.8 1 23 282 304 282 304 0.98 10 11 0.00011 0.0072 17.8 0.3 1 23 310 332 310 332 0.98 11 11 0.00023 0.015 16.8 4.5 1 21 338 358 338 360 0.96
Sequence Information
- Coding Sequence
- ATGAAGGACATTGCAGGAAACCCACAGGCCATAGAAAATAACTCCAAAGAAGTTTTGAAAAACATCAAGAAGCCAATAACAGACACAGAAATAGAAGAGGCATTGAATAATGTGTTTGGAAAAACTCCTGAAAAGAACGATAAATGTGCATGCCAGGTTTGCAATAAAGAGTTCAGTTGCAAAAGGCAATTAACACGGCACGAAAAAACTCACGTCGGAATACGAAGCCACATTTGTGAAGTTTGTGGAAAAGCTTACGTAGAGTCTGGGTCTCTGAGAAAGCACTTTTTATCGAAACATTCAGGAAGACAAAAGCCGCACAAGTGTTTGCAATGTAACCAAAGATTCGACCTACGATCAACACTGATTAGACACGTAAGAATCCATACTGGAGAAAAGCCATTTGGGTGCGACATTTGCCTCAAATTTTATCCATCCAAATCGTACTTGAGTAAACATAGAAAGTCTCATTTTGAAAAGCGCAGCAAACCATTCATTTGTGAAGTATGCAGCAAATCTTTTTCCCTTAAGGACGGTCTAAAAGCTCACCTAATCACTCACACAAATCATCGTCCTTATCGGTGCACCATGTGTGATAAATCTTTCTCCATGAAAGGCTCTCTTCAATCCCACATCAAATACGTTCACACGAAACAAAAAGATTTCATGTGCCAGGTTTGCGCAAAAGTCtttgttacaaattttgaattaaaagaacACTTGAGAAAGCACAGCGGAGAAAAAAAAGAATGTAAATATCAATGCAAGTTATGCGATAAAAATTTATCGTCTTCGGCGCATTTGAAATTACACGTCCGCTCCGAACATACTGGAGAGAGACCATACCAATGTGAAATTTGCATGAAAGCTTTCTTCACCGGTCAAGCATTAAAAATCCATAAGCGATATCACACTGGCGAAAAGCCCTATTCTTGTAGTTTCTGCGGAAAACCTTTCGTGACGAACGAAAGGGTGAAAGTGCACGAAAGAATTCACACCGGCGAAAGACCATACAAGTGCACGCTGTGTAATTCTGCGTTTTCCCAAAGCAGTACTCTTAAAACACACATGAAGTGCCACTGA
- Protein Sequence
- MKDIAGNPQAIENNSKEVLKNIKKPITDTEIEEALNNVFGKTPEKNDKCACQVCNKEFSCKRQLTRHEKTHVGIRSHICEVCGKAYVESGSLRKHFLSKHSGRQKPHKCLQCNQRFDLRSTLIRHVRIHTGEKPFGCDICLKFYPSKSYLSKHRKSHFEKRSKPFICEVCSKSFSLKDGLKAHLITHTNHRPYRCTMCDKSFSMKGSLQSHIKYVHTKQKDFMCQVCAKVFVTNFELKEHLRKHSGEKKECKYQCKLCDKNLSSSAHLKLHVRSEHTGERPYQCEICMKAFFTGQALKIHKRYHTGEKPYSCSFCGKPFVTNERVKVHERIHTGERPYKCTLCNSAFSQSSTLKTHMKCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294121;
- 90% Identity
- iTF_00271610; iTF_00270212; iTF_01294121;
- 80% Identity
- -