Cfla016093.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:7252467-7253714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.006 0.38 12.4 3.9 1 23 86 108 86 108 0.96 2 11 6e-06 0.00039 21.8 5.8 1 23 114 136 114 136 0.97 3 11 0.0026 0.17 13.5 2.9 1 23 142 164 142 164 0.98 4 11 7e-06 0.00045 21.6 3.0 1 23 194 216 194 216 0.99 5 11 9.3e-05 0.0059 18.1 0.5 1 23 222 244 222 244 0.99 6 11 1.1e-05 0.00071 21.0 1.7 1 23 250 272 250 272 0.99 7 11 2.2e-06 0.00014 23.2 2.2 1 23 278 300 278 300 0.99 8 11 2.7e-05 0.0017 19.8 1.4 1 23 306 328 306 328 0.98 9 11 5.1e-06 0.00033 22.0 4.0 1 23 334 356 334 356 0.99 10 11 1e-05 0.00065 21.1 2.4 1 23 362 384 362 384 0.99 11 11 2.1e-05 0.0014 20.1 4.3 1 23 390 412 390 412 0.99
Sequence Information
- Coding Sequence
- ATGAACATCAAGCTGGAAGATATCCATCAGTCGATCGACACCACAGCGACTCCTTCAATTAAATCAGAAGTAGAATATGTTAGgaaacatattaaaattgaagaaccGCAGGATGTGGATATCGAGTTGGAAtccttgcatcattccattgacattaaagaagagACTTCAGGGAGAGACTCCCAATTGGACCAAAACTGCCAATACCAGTTGCAACTTGGAGTTCAAGGAAAAACTGGTACTGGTGATAAGGCTTTTAAGTGcaacatttgtaattttaactgttcaataaaacaaaatttgcaaagACATTCaggaactcataccggcgagaaaccatatGATTGCACTGTTTGcgataaaaaattttcacataAATCAAAATTGCAAAGACATCTACATATTCACACCGGCGAAAAGCCTTTCGAATGttcaatttgcgattataaaacttcccaaaaatgtattttggaGAGACATTTACGATCTCATTCCGGCGAAAAATCGTCagagtgcacagtttgcgatgaTCAAAGTACACAAAACGGTGTTTTACGAACGCATACCGGCGGCAAACCGTATGAGTGCACAggttgcgattataaatgttcagaTAAATCAAGACTTCAAAGACATCTACGTATTCACACAGGCGAAAAGCCATTTGAATGttcaatttgcgattataaagcTTCCGAAAAAAGGAGTTTACAAATACATTTACgtactcataccggcgaaaaaccgtacgaaTGCACAGATTGCGACTATAAATGTGCTCAAAAGGGTGGTTTGAGAatgcatttacgaactcataccggcgagaaaccgtacgagtgcacagtttgtgattataaatttaCCAACAAAGGTTCATTGCGAATGCATTTTCGAACTCAcactggcgaaaaaccgtacgcGTGCAcagtttgtgattataaatgtgctAAAAAGGGAGATTTGCAAAaacatttacgaattcatactggcgaaaagCCGTAtaagtgcacagtttgcgattttaaatgttccGACAAAAGTTCCTTGCGAattcatttacgaactcataccggtaTAAAACCGTACCAATGCACAggttgcgattataaatgttctgaAAAAAGTTCGTTGCGAATACATTTGCGAATTCATACCAAcgaaaaaccgtacgagtgcaCTGTTTGCGATCATAGATGTTCGAGTAGCGGTAACTTGCGAAGACATTTAAGTACTCACACTGGCAAATAA
- Protein Sequence
- MNIKLEDIHQSIDTTATPSIKSEVEYVRKHIKIEEPQDVDIELESLHHSIDIKEETSGRDSQLDQNCQYQLQLGVQGKTGTGDKAFKCNICNFNCSIKQNLQRHSGTHTGEKPYDCTVCDKKFSHKSKLQRHLHIHTGEKPFECSICDYKTSQKCILERHLRSHSGEKSSECTVCDDQSTQNGVLRTHTGGKPYECTGCDYKCSDKSRLQRHLRIHTGEKPFECSICDYKASEKRSLQIHLRTHTGEKPYECTDCDYKCAQKGGLRMHLRTHTGEKPYECTVCDYKFTNKGSLRMHFRTHTGEKPYACTVCDYKCAKKGDLQKHLRIHTGEKPYKCTVCDFKCSDKSSLRIHLRTHTGIKPYQCTGCDYKCSEKSSLRIHLRIHTNEKPYECTVCDHRCSSSGNLRRHLSTHTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -