Cfla015615.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:3731417-3732868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0035 0.22 13.1 0.3 1 23 78 100 78 100 0.97 2 14 1.5e-05 0.00095 20.6 1.4 1 23 106 128 106 128 0.98 3 14 8.4e-05 0.0054 18.2 3.4 1 23 134 156 134 156 0.98 4 14 2.1e-05 0.0013 20.1 1.2 1 23 162 184 162 184 0.99 5 14 4.7e-05 0.003 19.0 3.2 1 23 190 212 190 212 0.97 6 14 2.1e-05 0.0014 20.1 4.2 1 23 218 240 218 240 0.99 7 14 1.2 78 5.1 0.9 1 20 246 265 246 268 0.74 8 14 0.00013 0.0081 17.7 2.2 1 23 274 296 274 296 0.98 9 14 0.0016 0.1 14.2 1.6 1 23 302 325 302 325 0.97 10 14 0.0027 0.17 13.5 1.7 1 23 331 353 331 353 0.95 11 14 1.4e-05 0.00088 20.7 0.8 1 23 359 381 359 381 0.98 12 14 6e-05 0.0038 18.7 2.7 1 23 387 409 387 409 0.99 13 14 2.9e-05 0.0018 19.7 0.7 1 23 415 437 415 437 0.98 14 14 0.0024 0.16 13.6 3.5 2 23 444 466 443 466 0.96
Sequence Information
- Coding Sequence
- atgaataataaaatggaggaaattcaagaaattaaaaCAGAAGAGGTGGCCGGCATAGATATCAAAATAGAAGTTTTTCAGCATTCCGATGAGAGTTCCAGAGAAGCAGGCAATGGCAGCAAAGACATCAAAATTGAAGAGATGGTGGGCATGGATATGAAGCTGGAAGActtgcatcattccatcgacattaaagaagagACTTTGGTGATTTCCCAAACGGGTAAACGTTTCGAATGTCGGGTGTGTACCAAACCATTTGCCAGTAACTTGCGACTTAGAGAGCACGCAAAAATTCATGCTGACGAAAAGCCGTTTATGTGCgatatttgcgattataaatccaATCGGCAAAGAGATTTGACCAATCATTTGCGGAcgcatactggcgagaaaccgtttcaGTGTACAGtgtgcgattataaatgttctcaaaAAGGATCACTGAAAATCCATTTTAGAAtacataccggggaaaaaccgtttcaGTGTAAAGTTTGCGATAGCAAATTTTCTCAGAAAGGAAAGTTGAGTGAACATTTACGAATTCATTCCGGTCTGAAACCCCACGAGtgcaacatttgcgattataaatgttctcggAAGGCAGATTTGAGAAGTCACGCACGAAttcacaccggggaaaaaccgttcgagtgtacAATCTGCGATTACAAATGTTCTCATAAAGGACTTCTGACGGTTCACTTGCGGACTCATACCGGTGAGAAGCCTTTCGAATGTAAACTCTGCGATTATAAGTCTTTTCGTCGGGAACGGGTGAACGAACATTTATGGACTCACACCAGTGATAAACCGTTTGtgtgtaacatttgcgattacaaatgttATCGGAAGCAAGATTTGAATGGTCATTTACGAATCCATTCCGGTGAGAAGCCGTTTGAGTGTAACATCTGCGACTATAAGTCTTCCCAAAAAAGACGTTTGAAAGACCACTACTTACGAATCCATTTTGGTGAGAAGCCGTTCGAATGTACCATTTgcgatttcaaaactttctataAGCAAAATCTCAAAGGTCACATTCTGAAACACTCTGACGATAAGCCCTTCGAGTGCaacatttgcaattataaatctTCCCGAAAGGGACTACTGCAAAGTCATCTACGTATACATACGGGGGAGAAACCGTATCAGTGTAATATATGCGATTTCAAATGTTCCCAAAAGCCAAAGTTAACCGATCATTTACGAATTCATTCTGGCGAGAAGCCGTTCGAATGCCtggtttgtgattataaatcttCTCGAAAACAGGATTTGGAACGGCATTTACGAATTCATTCTGACGAGAAGTCGGTTGAGTGCAACCTATGCAATTACAAATGCTCTCAAAAGAGATATTTGAAAGTCCACTTTCGAAAAGCACATTTACCTCGAGAAAAGCTAGAACATCAAGTTGAACCTATTTCTCAGCCGGTCTAA
- Protein Sequence
- MNNKMEEIQEIKTEEVAGIDIKIEVFQHSDESSREAGNGSKDIKIEEMVGMDMKLEDLHHSIDIKEETLVISQTGKRFECRVCTKPFASNLRLREHAKIHADEKPFMCDICDYKSNRQRDLTNHLRTHTGEKPFQCTVCDYKCSQKGSLKIHFRIHTGEKPFQCKVCDSKFSQKGKLSEHLRIHSGLKPHECNICDYKCSRKADLRSHARIHTGEKPFECTICDYKCSHKGLLTVHLRTHTGEKPFECKLCDYKSFRRERVNEHLWTHTSDKPFVCNICDYKCYRKQDLNGHLRIHSGEKPFECNICDYKSSQKRRLKDHYLRIHFGEKPFECTICDFKTFYKQNLKGHILKHSDDKPFECNICNYKSSRKGLLQSHLRIHTGEKPYQCNICDFKCSQKPKLTDHLRIHSGEKPFECLVCDYKSSRKQDLERHLRIHSDEKSVECNLCNYKCSQKRYLKVHFRKAHLPREKLEHQVEPISQPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271570;
- 90% Identity
- iTF_00271570;
- 80% Identity
- -