Cfla015506.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis flavilabris
Gene Symbol
-
Assembly
GCA_949152465.1
Location
OX424437.1:2588967-2596180[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00014 0.0091 17.5 2.4 1 23 135 157 135 157 0.95
2 16 0.0002 0.013 17.0 6.3 1 23 163 185 163 185 0.97
3 16 0.00072 0.046 15.3 2.8 1 23 191 213 191 213 0.98
4 16 0.00033 0.021 16.4 1.4 1 23 219 241 219 241 0.98
5 16 5.7e-06 0.00037 21.9 0.2 1 23 247 269 247 269 0.99
6 16 5.9e-05 0.0038 18.7 1.2 1 23 275 297 275 297 0.99
7 16 9.8e-05 0.0062 18.0 4.6 1 23 303 325 303 325 0.98
8 16 0.00099 0.063 14.8 1.2 3 23 333 353 331 353 0.98
9 16 0.012 0.76 11.4 0.8 1 23 442 464 442 464 0.98
10 16 0.0016 0.1 14.2 2.8 1 23 470 492 470 492 0.97
11 16 0.0085 0.54 11.9 0.8 3 23 500 520 498 520 0.97
12 16 0.0026 0.17 13.5 0.6 1 23 527 550 527 550 0.96
13 16 0.00038 0.024 16.2 4.2 1 23 579 601 579 601 0.97
14 16 0.00055 0.035 15.7 0.3 1 23 618 640 618 640 0.97
15 16 0.00026 0.016 16.7 0.4 1 23 646 668 646 668 0.96
16 16 0.047 3 9.6 2.0 1 20 674 693 674 694 0.95

Sequence Information

Coding Sequence
ATGGATCAACTGCAGGattcaaaagaaattaaaaatgtctGCAGAGAAATTAAAACGGAAAACTTGGATATCAAGCTGGAAAATCTATACGATTCCATGGGCAACGAGGAAGTGTATTTACGAGAATTCCAAAGTTGCAGCCAAGAAGTTAAAATCGAAGAGATGGATGTCAAACTGGAAGAACTGCATCATTCGGTTGACATAAAAGAAGATACTTCGGTGATCGAATCTCAACCGGACCTTGATGGGGAAACGTCGAAATGTAAGCAATATGAATGTCGGGACCACATCAAGTCGGAAGAAATAAAAACTGAATTAGAGttggaagatttgcatcattccatcgacattaaagaagaaaccAGCGGTGAACCATTTGAAGCTGTTTCTGGCGAAAAGTCATTCTTATGTGAAATTTGTAACCGTAAATATGCACATAGACAGAGTTTAAGAAATCATTTAAGAATTCACACTGGTGACAAGCAGTTTGATTGTGAGGTTTGTCAGCGTAAATTTTgccataaaataagtttaaaaaatcacttaagaactcatactggcgagaaaccgtattcCTGTCAGCTTTGTGATTACAAATGTATAACAAAGGGCTATCTCACAAGTCATCTAAAAATTcacactggcgagaaaccgtatgcCTGCCAACTTTGTGACTATAAATCTGCAGAACACAGCAATTTAAGACGTCACTTAAGAATTCACAcaggcgaaaaaccatttaagtgtGGAATTTGTGAGTGGGAATTTGCCTTGAAAGTAAATTTACGAGAACATATGCGAACTCACACTGGCGAGAAGCCATTTGAGTGCGATATTTGCGACTACAAGTGTAGATATAGAGGAGGTTTAGAGATTCATTTGAGAACTCATACGGGGGAAGAACCGTTTATCTGTAAAATTTGCGATCGCAAATGTGCGCATAAAGAAAGCTTAAAGGTTCATTTGAAAACCCATACGAATGAAAAGCCGTTTTGGTGTGAATTTTGCGACTACAAATCGACTCAAaagggaaattttgtaaatcatttgAGGACTCACACTGACGACAAACCGTTCAGAATTATTCCCACCAAAATGGAGAAGGAAGAAGTAGACCTAAGATTTAATGTGGAAGACTtacatcattccattgacattaagGAAGAGCAGTTTTCTGAACCGGAAAGGGAAATTGAAAAACTCCCAAAAGAGGACCGTGAAACAAAAGAAGAATGGGAATACACGGAATTCAATCtggaagatttgcatcattccattgataTCAAGGAGGAGCCTCCACTATTTGAATTCAAAGGAAAACTCTTCAGGTGCGAGGTTTGTGGCTTTGAAACTGCCCATAAGAATTCTTGGATTAATCATTCCAGAATTCAcactggcgaaaagccatttgcGTGCGAGTTATGTACCTATAAATGTATCATCAAACGGAACCTGACGCGGCATATGAtgactcataccggggaaaaaccgttcggATGTAATCTTTGCGACTTGAAATTTACGCGTCAAGAGACTTTGAACTTCCATTTACAAGTTCATACTGGCAAGAGAATGGTTTACACTTGCGAAACATGTGGCCACGAATATTTACGTAAAGCTGCATTGCGACGACATATTATGGCTTCCCATCCACCGAAAGGAGAAATTTGTAACTCCAAAATTGTATATACGAAAAAGTGGAAGGAATTATCTCTAGAAAAGCCCACGAAGAtatttatttgtgaaatatGCGGCTATCAATGCTGCACGAAGCGAACCTTACAACGGCACTTGTTAATTCACACCGGCGAAAAGCCGCTTGTCTGTAAAATCCATAACAGCGCGAAGACGTTTGCGTGTGACATGTGTAACTATGAAAGTTCAAGTAGACGGGAATTGAAAGTGCACATGATAATGCATTTCGGGAAAAAACCGTTTATATGTGAGATATGTTCCCGAAGTTATACGAGCAGGTCTATACTGAAACGGCACATGGGAATTCACACCGGCGAGAAGCCGTTTGCGTGTGCAACCTGCGACTACAAAACTGCGCGTAAACATTGTCTGAGAAAGCATATTGTAGGAAATCAGATTTGTAAAACAAACATCAGAAAATTTTCTTCTGACGATGACATGTCGGCTAGATTTCATATTCAGCACTGA
Protein Sequence
MDQLQDSKEIKNVCREIKTENLDIKLENLYDSMGNEEVYLREFQSCSQEVKIEEMDVKLEELHHSVDIKEDTSVIESQPDLDGETSKCKQYECRDHIKSEEIKTELELEDLHHSIDIKEETSGEPFEAVSGEKSFLCEICNRKYAHRQSLRNHLRIHTGDKQFDCEVCQRKFCHKISLKNHLRTHTGEKPYSCQLCDYKCITKGYLTSHLKIHTGEKPYACQLCDYKSAEHSNLRRHLRIHTGEKPFKCGICEWEFALKVNLREHMRTHTGEKPFECDICDYKCRYRGGLEIHLRTHTGEEPFICKICDRKCAHKESLKVHLKTHTNEKPFWCEFCDYKSTQKGNFVNHLRTHTDDKPFRIIPTKMEKEEVDLRFNVEDLHHSIDIKEEQFSEPEREIEKLPKEDRETKEEWEYTEFNLEDLHHSIDIKEEPPLFEFKGKLFRCEVCGFETAHKNSWINHSRIHTGEKPFACELCTYKCIIKRNLTRHMMTHTGEKPFGCNLCDLKFTRQETLNFHLQVHTGKRMVYTCETCGHEYLRKAALRRHIMASHPPKGEICNSKIVYTKKWKELSLEKPTKIFICEICGYQCCTKRTLQRHLLIHTGEKPLVCKIHNSAKTFACDMCNYESSSRRELKVHMIMHFGKKPFICEICSRSYTSRSILKRHMGIHTGEKPFACATCDYKTARKHCLRKHIVGNQICKTNIRKFSSDDDMSARFHIQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-