Cfla020914.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis flavilabris
Gene Symbol
-
Assembly
GCA_949152465.1
Location
OX424437.1:34432601-34439599[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0006 0.039 15.5 1.0 1 23 107 129 107 129 0.97
2 17 3.4e-05 0.0022 19.5 0.9 1 23 135 157 135 157 0.98
3 17 0.00037 0.024 16.2 0.2 1 23 163 185 163 185 0.99
4 17 0.0013 0.081 14.5 0.9 1 23 205 227 205 227 0.98
5 17 0.0016 0.1 14.2 1.5 1 23 261 284 261 284 0.98
6 17 0.00014 0.0091 17.5 3.5 1 23 289 311 289 311 0.95
7 17 0.0017 0.11 14.1 3.2 1 23 317 339 317 339 0.97
8 17 0.0057 0.37 12.4 0.9 3 23 347 368 345 368 0.96
9 17 0.00051 0.032 15.8 0.5 1 23 374 396 374 396 0.98
10 17 0.00029 0.019 16.5 1.0 1 23 402 424 402 424 0.98
11 17 0.0015 0.099 14.2 4.3 1 23 430 453 430 453 0.96
12 17 0.00015 0.0098 17.4 0.4 1 23 459 481 459 481 0.98
13 17 0.023 1.5 10.5 4.6 1 23 487 509 487 509 0.97
14 17 0.00045 0.029 15.9 0.9 1 23 515 537 515 537 0.97
15 17 4.5e-05 0.0029 19.1 2.0 1 23 543 565 543 565 0.98
16 17 0.068 4.3 9.1 8.2 1 23 571 593 571 593 0.98
17 17 0.00012 0.0078 17.7 3.5 1 23 599 621 599 621 0.99

Sequence Information

Coding Sequence
ATGATGCAAAATCCGAAAGAATCGATTAATTGTTCTAACACGacatataattttaatgaaaattttgaaatcaaagtGGAAGTGATGGAATACCCGGAAACCAATTCAGAACTTCTGCAAAATCCACATGAAATTACCTTTCCTTCGAGCATCGCAGTACACGAAATTAAACTGGAACCAATCAAATCCACAGACGATATCGATTCAGAAAATTTACATCATTCAATTGATATTAAAGATCTCTCTCTGTCGGAATATCAAGAATCGTCATCTTTTTGTTCGACAGAGTTGAATAATAGCTTGCAACCGGAAGATGTATTTGCGTGTGATATGTGCGATTATAAAAGTACATTGAAAGGAAATTTCAAAGTGCATTTGAGGACCCATACAGGAGAGAAACCATTCACATGTGAAATTTGTAActcaaaattttcacaaaaagtaAGTTTGAACATACATTTAAGACTTCACGCTGGGGAAAAACCTTACGTGTGTGATATTTGTGGCTACAAGTCTGCACAAAAAGGAAATATGGTGGTACATAAGAAAACACATGCAAAGACAACTGCGCAAGGGTATGATTTGATAAAAATGGATTCAGGTAAAAAAGTATTTGTTTGTAAAATCTGCAACACAAAGTTTTTAGATAAAGTAAGTTTGAAAGTGCACCTGAAACTTCATAATGATGTAAAACCGCTTACATATGATCCTTATGAATATAAATTTCCTCCGGAAGAAGACTTTGAAATTAAGTTGAAAACTGAAACTTTGAAAAAGCTGTATAAATGCGAAGTTTGTAGCTTTACAATTTCTAACAAACGAGACTTTAATGTCCATTTAAAAACGAACCACGACCTGAAGCCATTTTTATGTAAAACGTGTGGTTATACCTGTACGCAAAACGCAAATATGAAAACGCATATGAAAATTCACACAGGAGAGAAATCGTTTGATtgtgaattttgcaataatACATTTAGACACAAAATAACTTTACAAGAACACTTGAGACTCCACACCGGAGAGAAGCCTTATGGGTGCGACCTCTGCGACTATAAATGTGCTCAAAGAGCAAATTGGAGGAGGCATTTATTGAAAGCCCATTCTGATGAGAAACCCTTCCAGTGCGAAATCTGTGACTACAAAAGCGcaataaaggaaaatttgaagttgCACTTAAGAAACCACACCAACGAGAAACCATTTGTatgtgaaatttgcaataataaatatGCACACAAAGGAAGTTTACGGGAGCATTTAAAAATCCATACCGGTGATAAACCCTTCTCGTGCGATCAATGCTATTATAAATGTACACGAAGATCAAATTTGATAAAGCATGTTTTAAAGATGCATTCAAATGAGAAGCCTTTTGAATGCGAAATCTGTGATTACAAAAGCGCAGGAAAGGAGAATTTGAAGCTACATTTGAGGAAACACACGGGAGAAAAACCACACGTTTGCGAAATATGTAACCACAGATTTCTatataaaactaatttgaaGATGCACTTACAAATGCACACCGGAGCCAAGCCATTTGCATGCGAATTATGCGACTATAAATGTGCacaaaagggaaatttgaaagtACATGCTCAAAGTCATACTGCGGAAAAGGCGTTTACGTGTGAAATCTGCAACTCTAAATTTACAAAGAAATCAAGTTTGACGATGCATTTAAAAATCCATGCCGGCATGAAAGAACATCAGTGTACGATATGTGAATACAGATGTTCGCTTAAAGGAAATTTGAAGTGTCACATGCGAACACATACCGGTGCGAAACCGTACTCCTGTGACTTctgtgattataaatgtgcacagAAAGGAAGTTTAAAGTCGCATTTGAGAACCCACAGGAATCAAAAAACATCTttaatttgtaaaattaacatCATCAAGACAATCGCGAGAAATAATGGTTACGATAGCGAGTTGATAAACAGAATAATACACAACAAAGGCAGAGAGAAAAGAGAAAAAGTAAACAACACGGAAATGCTACCTGGATACAGCAAGATCTCCTACCTGGGCCCCATCACCCAGAGAATTTACCGACTGCTAAATAAGTTCGGAATACAAACGTCCGTGAAGAGCGTGAACACTGTAAAGCAATCAATCCTCAACAACAAGGACAAAACCAATACCTTAGAAAAGAGCGGAGTATACGCTATAAAATGCAACGATTGGAACGCTAAATACATTGAGCAGACAGGGAGAAATCTAAAAACCAGGTTAGCAgaacacaaaaacaaattttcggCTGTGTCACAACACCTATTGAATACCAGGCACTCGATCTCCCAAAAGAACATCGAACTGCTGCATAACtgcaaaaaaggaaaaaagctCGACCTCCTGGAATACCTAGAAATCAAACGAACACAGAAAGACCTGAATACAGATGTACTGAACGAACAAGAAAATCTTGGCTTCACTCCAGTATTTGATGTGTTTTAA
Protein Sequence
MMQNPKESINCSNTTYNFNENFEIKVEVMEYPETNSELLQNPHEITFPSSIAVHEIKLEPIKSTDDIDSENLHHSIDIKDLSLSEYQESSSFCSTELNNSLQPEDVFACDMCDYKSTLKGNFKVHLRTHTGEKPFTCEICNSKFSQKVSLNIHLRLHAGEKPYVCDICGYKSAQKGNMVVHKKTHAKTTAQGYDLIKMDSGKKVFVCKICNTKFLDKVSLKVHLKLHNDVKPLTYDPYEYKFPPEEDFEIKLKTETLKKLYKCEVCSFTISNKRDFNVHLKTNHDLKPFLCKTCGYTCTQNANMKTHMKIHTGEKSFDCEFCNNTFRHKITLQEHLRLHTGEKPYGCDLCDYKCAQRANWRRHLLKAHSDEKPFQCEICDYKSAIKENLKLHLRNHTNEKPFVCEICNNKYAHKGSLREHLKIHTGDKPFSCDQCYYKCTRRSNLIKHVLKMHSNEKPFECEICDYKSAGKENLKLHLRKHTGEKPHVCEICNHRFLYKTNLKMHLQMHTGAKPFACELCDYKCAQKGNLKVHAQSHTAEKAFTCEICNSKFTKKSSLTMHLKIHAGMKEHQCTICEYRCSLKGNLKCHMRTHTGAKPYSCDFCDYKCAQKGSLKSHLRTHRNQKTSLICKINIIKTIARNNGYDSELINRIIHNKGREKREKVNNTEMLPGYSKISYLGPITQRIYRLLNKFGIQTSVKSVNTVKQSILNNKDKTNTLEKSGVYAIKCNDWNAKYIEQTGRNLKTRLAEHKNKFSAVSQHLLNTRHSISQKNIELLHNCKKGKKLDLLEYLEIKRTQKDLNTDVLNEQENLGFTPVFDVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-