Cfla016855.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:11429677-11430939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.6e-05 0.0049 18.4 0.8 1 23 78 100 78 100 0.98 2 12 1.6e-06 0.0001 23.7 3.0 1 23 106 128 106 128 0.97 3 12 1.1e-05 0.00071 21.0 0.9 1 23 134 156 134 156 0.97 4 12 0.0001 0.0065 18.0 3.0 1 23 162 184 162 184 0.97 5 12 2.8e-07 1.8e-05 26.0 0.7 1 23 190 212 190 212 0.97 6 12 5e-05 0.0032 18.9 3.5 1 23 219 241 219 241 0.97 7 12 4.1e-05 0.0026 19.2 1.1 3 23 249 269 247 269 0.98 8 12 1.1e-06 6.8e-05 24.2 0.4 1 23 275 297 275 297 0.97 9 12 7.9e-06 0.00051 21.4 0.5 1 23 303 325 303 325 0.97 10 12 2.6e-05 0.0017 19.8 0.5 1 23 331 353 331 353 0.97 11 12 0.016 1 11.0 2.9 1 23 359 381 359 381 0.96 12 12 4.6e-06 0.00029 22.2 2.9 1 23 387 409 387 409 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAATGAAAATTGCGGTTGGTTTAGAAAGCATAGAAAACACTTATGAAGTTTCCGACACTCCATGTAGTTCAATTGGgatcttgaaaattaaaacagaaCAAGTAGAAGACACCGACATCAAATTAGAAAGTCTACATCATTCCATCGATATTAAAGATGAAGTTACCGAGGTGGCTAAAGAATGCAAACCACTTCTTTGTGAAGTAAACAAGAACACAGAATTGTTTGAATGTCAAATTTGTAACCTAAAATATAAACAACAGGAAACTTTAAATATTCACTCAAGAATTCACTCGGAGGTTAAATCCTTTGCATGTGCAATTTGTGACCGAAAGTTTACTCGTAAGgaacatttaaaaactcatttaAGAAATCATAGTGGCAATAAACCTTTTGCATGTGAAATTTGTCTACAGAAATTTTCGACTAACGGGCACTTGACAGTTCATTTAAGAATTCATACGGGGGACAAACCTTTTGCATGTGAAATTTGTCACCAAAAGTTTGCTCGTACAGATTATTTAAAACGTCATTTCAAAATTCACACTGACGAAGAACTTTTTGCCTGTGAAATTTGTGATGAAAAGTTTGCTAGAACAGATAATTTAAAACGGCATTTAAGGAAACATACTAATGACGGAAAATGCTTTGCATGTGAAATTTGTGAACGGAAGTTTTCGCATAAAAGAAACATGAAATCTCATTTAAGCACTCACACGGGGGACAAACCTTTTGGATGTCAAATTTGTGACCAAAAGTTTGCTCGTCAAAAATATTTAAGCCGTCATTTGCTAAGGCATAGTGGCGAAAAACCTTTTGCTTGTGAAATTTGTGGGCAGAAATTTTCAACTAAAAGCAGCGTGAAAATTCATTTAAGAATTCACACGGGGGATAAACCATTTgcatgtgaaatttgtgaccAGAGGTTTGCTCGAACTGATTATTTGAACCTTCATTTAAGACGACATAGTGGCGGAAAACCTTTTGCATGTGGAATTTGTGAAGAGAAATTTTCGTCTAAAAGCTACgtgaaaattcatttaaaaactcatacGCTGGACAAACCTTTTGCTTGTGAAACTTGTGAcaagaaatttttattccaaTGTAGTTTAACGCGACACCTAGGGATGCATACAGGCTATAAATGTTTTATATGTGAAATTTGTCATAAAAGGTATGCACGGAAAGAGAGTTTAACACGGCATCTAAAAAATCATTTCCAAGCTCATAAGGACGAGAATCCTTTTACTTAA
- Protein Sequence
- MDEMKIAVGLESIENTYEVSDTPCSSIGILKIKTEQVEDTDIKLESLHHSIDIKDEVTEVAKECKPLLCEVNKNTELFECQICNLKYKQQETLNIHSRIHSEVKSFACAICDRKFTRKEHLKTHLRNHSGNKPFACEICLQKFSTNGHLTVHLRIHTGDKPFACEICHQKFARTDYLKRHFKIHTDEELFACEICDEKFARTDNLKRHLRKHTNDGKCFACEICERKFSHKRNMKSHLSTHTGDKPFGCQICDQKFARQKYLSRHLLRHSGEKPFACEICGQKFSTKSSVKIHLRIHTGDKPFACEICDQRFARTDYLNLHLRRHSGGKPFACGICEEKFSSKSYVKIHLKTHTLDKPFACETCDKKFLFQCSLTRHLGMHTGYKCFICEICHKRYARKESLTRHLKNHFQAHKDENPFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271607;
- 90% Identity
- -
- 80% Identity
- -