Cfla021707.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:40585222-40592982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.84 54 5.6 0.7 3 23 90 109 88 109 0.94 2 20 8.8e-08 5.7e-06 27.6 1.9 1 23 115 137 115 137 0.98 3 20 1.3e-05 0.00086 20.7 4.3 1 23 143 166 143 166 0.97 4 20 0.007 0.45 12.2 1.5 3 23 174 195 172 195 0.96 5 20 0.026 1.6 10.4 0.2 3 23 203 224 202 224 0.97 6 20 6.3e-06 0.0004 21.8 0.4 2 23 229 250 228 250 0.97 7 20 5.4e-05 0.0035 18.8 1.3 2 23 257 278 256 278 0.96 8 20 0.0011 0.073 14.7 5.7 1 23 284 306 284 306 0.96 9 20 5.6 3.6e+02 3.0 0.5 1 8 312 319 312 320 0.90 10 20 0.9 58 5.5 0.6 3 23 344 363 342 363 0.90 11 20 0.00054 0.034 15.7 5.2 2 23 371 393 370 393 0.96 12 20 0.0026 0.17 13.5 4.8 1 23 398 421 398 421 0.97 13 20 0.002 0.13 13.9 2.3 1 23 427 450 427 450 0.96 14 20 0.0038 0.24 13.0 1.1 3 23 458 479 457 479 0.98 15 20 0.0006 0.038 15.5 1.7 2 23 487 508 486 508 0.97 16 20 0.0087 0.55 11.9 1.0 2 19 515 532 514 535 0.93 17 20 2.4e-05 0.0015 19.9 0.5 1 23 542 564 542 564 0.95 18 20 0.00014 0.0088 17.5 2.7 1 23 570 592 570 592 0.98 19 20 6.6e-07 4.2e-05 24.8 4.8 1 23 598 620 598 620 0.97 20 20 0.0061 0.39 12.4 5.0 1 23 626 648 626 648 0.97
Sequence Information
- Coding Sequence
- ATGTTTGGGTGGAATGACAGAATGTTTGAAAATCAGAAGCACCAAGAACAGTTCCACAAAGTTAAAGAGGAAAGGCATACGACTACAATGTTTCAAGAGTTGCAATCAAGgTCGCTTATGATGACCCAGGCTCAGAATGATAGCTCGGAAAGATTACTTGTGCAAAATtccaatacaataataaaatcaaaattagttCCAATGGTTGATCTTGAGGAATGGGTGAAAAATCTTGAATTCGTTCACGAACCAAATGTCATTACCAATTGTGTAATATGTAATCGACTATTCATGATTAAGGAATTAAATCGGCATGTAAAATCCCATCAAGAAAATCAAGATTTTAAATGTGATATTTGTGGAAAAGTATATTCTACAAAGAGAAATCTTAATCGTCACAAGAAAGTGCACAATTCGCAAAAAATGCATACATGCACTATTTGCCCTAAAAAGTTCACTTATGCCCACTTATTGAGAGACCACATGAACACTACCCATTCGGTGAAGAAATCATGGTTTTGTGATATATGTCAGCATtcgtttaaaatcaaaaaagctTTAGATTTGCATATTCGCTCTAGACACTCTAATGGTGGACCGCATGGATGCGATCTTTGCGATAAATCATATGCTATTGGGTCCATGTTAAAACAGCACTACCAATCTTCTCATTCCATAAGTTCGGAATGCCCAATTTGCAATGAAGTATTCTccagttattattatttgcaaaaacataaaaagattCATCGAGAGCCTGTTCGTATCGAGTGTCCAAATTGCAATAAAGTTTTCGATAACAAGACTTTGTTTAGACGGCATTTTAAACTCCACGGAGCCAAACAGAAATACATGTGCGAGTTGTGTGGAAAACACTTTACCACCAGATGTAGTCTGAGAGACCATAAGTTCATTCATGCTGGTATTAAACCGTTCGAATGCCACGATTGTGGCcAATTGCTCCCGATTGATCTCGACAAATGGGTTAAAAGCCTTCAATTGGTTCATCAACCAAATCATATTATCAGCTGTATAATATGTAACCGAATGTTTATGGTGAAGGAATTAAATCGGCATATTAAATTCCACCAAGACGTAAGTCAGCGTTCAAAATGTGATATTTGTGGAAAAGTTTGTTCAAATGCAAGTACTTTATGTTATCATAAGAAAAAGCAACATTCTCAAATTAGGCATACATGCAGAATTTGTCATAAAGAGTTCATTCATGCGCGCGTATTAAAAACGCACATGGATACTGTTCATGCAGtggaaaaaccatttttttgcGATATATGTCAGCAttcgtttaaaattaaacaagctTTAACTTACCATCTGCGGATTATGCACTCGAATGGTGGACCCCATGGATGCCAGTTTTGCGATAAAACATTTCCTATTCCGTGCATGTTAACACAGCATTATCGAGTTTCTCATTCACAAAATGAGAAACATACAAAATGTCCAATTTGCAAAGAagtgttttcgagttattattTTATGCAGCAACACAAGAAGAGTCACCAAGTTCATGTTCATGTTGAGTGCTCAACTTGTAAGAAAGTTTTTAATAACATGGCCACGTTTAAACGACATTCTCACGTTTCTAGAGAGAGACAGAAATACTTGTGCGAGTTGTGCGGAAAAGATTTTACTACTAGATCTAGTCTGAGGGACCATAATATGATTCATTCTGGCATTAAGCCGTTCGAATGCCATGATTGTGGCAGTCACTTTAATAAAAAGGATTCCTTACGCATTCACGTCTTGGTGCATTCTGGAGTAAAACCTCATTGCTGTCCAACTTGCGGAAAGAAATTTTCCCAAAGAAGTACCTTGAACATTCACATGAGGATTCACACTGGTGAAAAGCCATACAAATGTGAATTCTGCGATAAATCGTTTATTAGTCGAAATTTATTGAATTGCCATAAACGGAATCATAGATGTTAA
- Protein Sequence
- MFGWNDRMFENQKHQEQFHKVKEERHTTTMFQELQSRSLMMTQAQNDSSERLLVQNSNTIIKSKLVPMVDLEEWVKNLEFVHEPNVITNCVICNRLFMIKELNRHVKSHQENQDFKCDICGKVYSTKRNLNRHKKVHNSQKMHTCTICPKKFTYAHLLRDHMNTTHSVKKSWFCDICQHSFKIKKALDLHIRSRHSNGGPHGCDLCDKSYAIGSMLKQHYQSSHSISSECPICNEVFSSYYYLQKHKKIHREPVRIECPNCNKVFDNKTLFRRHFKLHGAKQKYMCELCGKHFTTRCSLRDHKFIHAGIKPFECHDCGQLLPIDLDKWVKSLQLVHQPNHIISCIICNRMFMVKELNRHIKFHQDVSQRSKCDICGKVCSNASTLCYHKKKQHSQIRHTCRICHKEFIHARVLKTHMDTVHAVEKPFFCDICQHSFKIKQALTYHLRIMHSNGGPHGCQFCDKTFPIPCMLTQHYRVSHSQNEKHTKCPICKEVFSSYYFMQQHKKSHQVHVHVECSTCKKVFNNMATFKRHSHVSRERQKYLCELCGKDFTTRSSLRDHNMIHSGIKPFECHDCGSHFNKKDSLRIHVLVHSGVKPHCCPTCGKKFSQRSTLNIHMRIHTGEKPYKCEFCDKSFISRNLLNCHKRNHRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -