Cfla021697.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:40517429-40525908[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0062 0.4 12.3 1.2 1 23 15 37 15 37 0.98 2 24 7.6e-05 0.0048 18.4 1.5 2 23 43 65 42 65 0.95 3 24 0.00031 0.02 16.4 0.2 1 23 71 94 71 94 0.97 4 24 0.0022 0.14 13.8 4.5 1 23 100 122 100 123 0.96 5 24 0.0014 0.087 14.4 1.4 1 23 128 150 128 150 0.98 6 24 0.0065 0.42 12.3 5.2 1 23 159 181 159 181 0.98 7 24 0.0016 0.1 14.2 0.1 1 23 187 209 187 209 0.97 8 24 0.00015 0.0096 17.4 3.7 1 23 215 237 215 237 0.97 9 24 1.6e-06 0.0001 23.7 4.1 1 23 243 265 243 265 0.98 10 24 0.1 6.4 8.5 0.6 1 14 271 284 271 285 0.91 11 24 3.1 2e+02 3.9 0.1 3 23 361 381 359 381 0.90 12 24 0.0027 0.17 13.5 1.2 1 23 400 423 400 423 0.96 13 24 0.1 6.5 8.5 3.6 1 23 428 451 428 451 0.90 14 24 0.0033 0.21 13.2 0.7 1 23 485 507 485 507 0.98 15 24 0.0011 0.069 14.7 1.0 1 23 513 536 513 536 0.97 16 24 0.00027 0.017 16.6 2.5 2 23 548 569 547 569 0.98 17 24 9.6e-05 0.0062 18.0 1.6 3 23 577 597 576 597 0.98 18 24 4.5e-06 0.00029 22.2 0.8 1 23 603 625 603 625 0.97 19 24 0.021 1.3 10.7 5.1 1 23 631 653 631 653 0.98 20 24 0.15 9.7 8.0 5.7 1 23 720 742 720 743 0.95 21 24 0.035 2.2 10.0 0.1 1 23 756 779 756 779 0.95 22 24 0.005 0.32 12.6 1.0 3 23 788 809 786 809 0.89 23 24 2.6 1.6e+02 4.1 0.1 3 23 831 852 830 852 0.95 24 24 2.6e-05 0.0017 19.8 1.0 1 23 861 884 861 884 0.95
Sequence Information
- Coding Sequence
- ATGAAAACCGAAGCAAATGACGATAATACAAATCAAAATGTTTACATGTGTAAGAAATGTGATTTGTTTCTAGAAAGTGCAGAGAAATTAAAATCACACTCTCGCAcacacaaagaaaaaaattgtgagTGTACCATCTGCAAAAAGAAATTTCCATATCCGTACCTATTGACTTTGCATATAAAATCGGTTCACGAAAATCAACGTCCGTTTTCTTGCGAAGAATGTAACACTGGCTACGCGACGAAAGCTTTGCTGAGATCTCACGTCAAGATGGTCCattccaaaatttacaaatacaaatgCGATAAGTGCGATAAGCGTTATAACATGAAGAAAACTTTCGAAAATCACTACGCCGTACACCACGAAGGAACCAGATACGAATGCGAGCACTGTGGAAAATTATACATGgatctttattattatagagCTCACTTACTTTCCCACGATCCAAATTACGTAAGCAAAAAATACATCTGTGAGATATGTAACAAGGAATTACACCACTCTGGTTCATACCACAAACACATGAGAATTCATAGTGGCAAGAACAAACACGTTTGCGAGCTTTGTGGTAAAGTTGTGGGATCTGTTGCCAGTTTACAAGACCACATGAATTTGCACAAAGGAATCAAAACCCACATCTGCCATGTGTGCGGAAAAGGATTTGTTAAGAagcaaaatttagatttacatAAACGAACCCACACTAAAGAAAAACCATACGAATGCGACGTTTGCAAAAAATGTTTCAGCCAGAGGAGCTCGCTAAAGATTCACCTCAGATATCATACTggggaaaaaccgtttaaaTGTGAAATTTGTCAAAAATCCTATGTAACTAAAGCCACGTCCGAAATTTCCATATTTCCAGTTGTGAAGCAAGAAACGTTTTCCGATTACGACGATTATATAGAAGACGAGAGAATAAAACTCGAAAGGTCGCCGAAAAAAAGgggtaaaaaatcaaaaaaacctACGGAGGGGTACGTAAATCCATTTGTTTACACAAACTTGAAGAAAAGCAAAAAGGCCAATAAGGAGTTTAAAGCGGAAGGAATCGGAAACAAATGGAATTGTATAATATGCAACCAAACTTCTCAAAATAAAGAAGCTTTGATTGATCACTACGAACAGCATAAAAACGAATGCGAAAATAGCACCGACTCCAAAAGCGAAAACGTTTGCGATTATTTTCGCTGCGTCATTTGTTCGCGCGAGTACACTTCCGCTAATGCTTACAAAAAACACTTGAAGCTCAAACACGGAGACAATTTCTACACCTGCGATCTTTGTAGTAAATCTTACAAAAACGCACTCTACTTGTGTCTTCATAATTTCAGTTCTCACTCCAATGACGGAAACTACGTATGCATagtatgcaattttaaaaccGAATCCAAGGATGTCATTAAATCGCACATTCAGGACCAcgaaaataattccaattttcaGTGTGACGTTTGCGATAGAAAGTTCCTAACGTCTGCTTGGTTTGAAGAGCACAAAAATACTCACATCGGAGCAATGCCTTTTCAATGCGAAATATGCTTACAAAATTTTCCCAATTCGCGTTACTTAACTTTACACAGAAAAAGTTTACACCTGAATGCCACTTACACGAATTTGTTGACAAATAAATGCGACTTGTGCGAGAAGCAATTCGcacataaaaaaagtttgataCTTCATCTCCGATCTCACACCGGCGAAAATACCGTCTTGTGCGATATGTGTGGAAAAAGCTTATCTAGCACGGAACACCTTAGGCAACATCTACGCATTCACACGGGTTATAAGCCACATATTTGTTCGGTTTGTGGTAAAGGATTTGCCAAAAAGAGTAATTTGACTCTGCACGAACGCGTCCATAGTGGCGAAAAGCCATACGTTTGTGGAACTTGTTGTAAATGTTTTTCCCAACGTTCCACTTTAGTCATTCACGAACGCTACCATTCTGGTGATCGACCTTATACCTGCCAATTATGTAAAAAAGCAAATGGCAAAACAAATCACAAAAACAAGTTTAAACCAGATACTAAAATTACAAACCTAAGCAGCAATTCAATAATATCTCAAAACGAAAAACTTACTGATGATGGGAAAGGGACGAAACTTATTATTCCTGTATTAAACAAAGACTATGATCTCACTTTTAAATGCCGGTATTGTACCGCTAGATTTGTAAGTCTTCGTAATTTTGCTTCGCATCATTATATACATCATCAACAAGCTTGCGGGCTTAAAGGTGAACATCACCGTCATTCCTGTAATATATGCGGAGCTTATTTCTTAGATAAGGGAGGACTTACAGATCATATTGAAATTATGCACATTGCAAAATCAAACTCATTAAATTGTATATATTGCAAGAAAACGTTTAGAACTACTGATGCTCTTAATAACCATGTGAAATTCGAACATAGAACTTCTCTTCAATTAGGAAAACGTGTTTTATGTGATAAAGTTAAACATCAAGATCATGGTTGCGGGATGTGCGATGCTTCGTTCTTAAGTAAGGAAGAAGTTGTAAAGCACACTGAAAAAATGCACGTTAAAAAATCAAGATCAAACGAATATATTTGTAAATACTGCAATAAAACGTTTAGTACCACTGTCGCTCTTAGTAACCATATCAATTTCGAACATACAAGCTTTCTGCAGTTCGAAGAACGAAAAGCAAAGTGA
- Protein Sequence
- MKTEANDDNTNQNVYMCKKCDLFLESAEKLKSHSRTHKEKNCECTICKKKFPYPYLLTLHIKSVHENQRPFSCEECNTGYATKALLRSHVKMVHSKIYKYKCDKCDKRYNMKKTFENHYAVHHEGTRYECEHCGKLYMDLYYYRAHLLSHDPNYVSKKYICEICNKELHHSGSYHKHMRIHSGKNKHVCELCGKVVGSVASLQDHMNLHKGIKTHICHVCGKGFVKKQNLDLHKRTHTKEKPYECDVCKKCFSQRSSLKIHLRYHTGEKPFKCEICQKSYVTKATSEISIFPVVKQETFSDYDDYIEDERIKLERSPKKRGKKSKKPTEGYVNPFVYTNLKKSKKANKEFKAEGIGNKWNCIICNQTSQNKEALIDHYEQHKNECENSTDSKSENVCDYFRCVICSREYTSANAYKKHLKLKHGDNFYTCDLCSKSYKNALYLCLHNFSSHSNDGNYVCIVCNFKTESKDVIKSHIQDHENNSNFQCDVCDRKFLTSAWFEEHKNTHIGAMPFQCEICLQNFPNSRYLTLHRKSLHLNATYTNLLTNKCDLCEKQFAHKKSLILHLRSHTGENTVLCDMCGKSLSSTEHLRQHLRIHTGYKPHICSVCGKGFAKKSNLTLHERVHSGEKPYVCGTCCKCFSQRSTLVIHERYHSGDRPYTCQLCKKANGKTNHKNKFKPDTKITNLSSNSIISQNEKLTDDGKGTKLIIPVLNKDYDLTFKCRYCTARFVSLRNFASHHYIHHQQACGLKGEHHRHSCNICGAYFLDKGGLTDHIEIMHIAKSNSLNCIYCKKTFRTTDALNNHVKFEHRTSLQLGKRVLCDKVKHQDHGCGMCDASFLSKEEVVKHTEKMHVKKSRSNEYICKYCNKTFSTTVALSNHINFEHTSFLQFEERKAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -