Basic Information

Insect: Cantharis flavilabris
Gene Symbol: Pcf11
Assembly: GCA_949152465.1
Location: OX424440.1:3474664-3489878[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.014 0.89 11.2 4.5 3 23 46 66 44 66 0.97

2 23 0.0039 0.25 13.0 6.2 1 23 72 94 72 94 0.99

3 23 0.00028 0.018 16.6 3.2 1 23 100 122 100 122 0.98

4 23 0.0031 0.2 13.3 2.7 1 23 128 150 128 150 0.99

5 23 0.027 1.7 10.3 0.7 1 23 156 179 156 179 0.96

6 23 1.4e-05 0.00088 20.7 3.2 1 23 185 207 185 207 0.98

7 23 0.015 0.99 11.1 0.9 1 23 213 235 213 235 0.97

8 23 3.4e-06 0.00022 22.6 2.0 1 23 241 263 241 263 0.98

9 23 1.4e-05 0.00088 20.7 1.0 1 23 269 291 269 291 0.99

10 23 0.014 0.89 11.2 0.1 1 23 297 320 297 320 0.95

11 23 0.00021 0.013 17.0 1.4 1 23 326 348 326 348 0.97

12 23 0.0028 0.18 13.4 1.3 1 23 354 376 354 376 0.97

13 23 0.00043 0.028 16.0 2.3 1 23 382 404 382 404 0.98

14 23 0.0027 0.17 13.5 2.6 2 23 411 432 410 432 0.97

15 23 0.0011 0.068 14.7 2.1 1 23 438 460 438 460 0.99

16 23 0.00023 0.015 16.8 0.4 1 23 466 488 466 488 0.98

17 23 0.0018 0.11 14.0 8.0 1 23 567 589 567 589 0.98

18 23 3.6e-05 0.0023 19.4 0.3 1 23 595 617 595 617 0.98

19 23 4.1e-05 0.0026 19.2 0.2 1 23 623 645 623 645 0.97

20 23 7.5e-05 0.0048 18.4 1.7 1 23 651 673 651 673 0.98

21 23 3.6e-05 0.0023 19.4 1.1 1 23 679 701 679 701 0.99

22 23 1.6e-05 0.00099 20.5 1.1 1 23 707 729 707 729 0.98

23 23 0.0025 0.16 13.6 1.4 1 19 735 753 735 753 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.014	0.89	11.2	4.5	3	23	46	66	44	66	0.97
2	23	0.0039	0.25	13.0	6.2	1	23	72	94	72	94	0.99
3	23	0.00028	0.018	16.6	3.2	1	23	100	122	100	122	0.98
4	23	0.0031	0.2	13.3	2.7	1	23	128	150	128	150	0.99
5	23	0.027	1.7	10.3	0.7	1	23	156	179	156	179	0.96
6	23	1.4e-05	0.00088	20.7	3.2	1	23	185	207	185	207	0.98
7	23	0.015	0.99	11.1	0.9	1	23	213	235	213	235	0.97
8	23	3.4e-06	0.00022	22.6	2.0	1	23	241	263	241	263	0.98
9	23	1.4e-05	0.00088	20.7	1.0	1	23	269	291	269	291	0.99
10	23	0.014	0.89	11.2	0.1	1	23	297	320	297	320	0.95
11	23	0.00021	0.013	17.0	1.4	1	23	326	348	326	348	0.97
12	23	0.0028	0.18	13.4	1.3	1	23	354	376	354	376	0.97
13	23	0.00043	0.028	16.0	2.3	1	23	382	404	382	404	0.98
14	23	0.0027	0.17	13.5	2.6	2	23	411	432	410	432	0.97
15	23	0.0011	0.068	14.7	2.1	1	23	438	460	438	460	0.99
16	23	0.00023	0.015	16.8	0.4	1	23	466	488	466	488	0.98
17	23	0.0018	0.11	14.0	8.0	1	23	567	589	567	589	0.98
18	23	3.6e-05	0.0023	19.4	0.3	1	23	595	617	595	617	0.98
19	23	4.1e-05	0.0026	19.2	0.2	1	23	623	645	623	645	0.97
20	23	7.5e-05	0.0048	18.4	1.7	1	23	651	673	651	673	0.98
21	23	3.6e-05	0.0023	19.4	1.1	1	23	679	701	679	701	0.99
22	23	1.6e-05	0.00099	20.5	1.1	1	23	707	729	707	729	0.98
23	23	0.0025	0.16	13.6	1.4	1	19	735	753	735	753	0.98

Sequence Information

Coding Sequence: atgGAAGCTCTTCAAATCAAAACGGAAGTATTTGAATTCAAGttggaagatttgcatcattcaatcgacattaaagaagaaactGACCTTCCGGACCGAGAATACAAACCAGAAATCAGCACGAAACCATTATTCTGTGAAATTTGTAACCACGAATCTTCAACGAGAGGATGTCTCAATAGGCATTTAAAAACTCACACCTACGATAAACCTTTTACATGTGCAATTTGTAATTGTAACTATGCACAGAAATGCAGTCTGAGGAAGCATTTGAAaactcataccggtgaaaaacgctttatatgtaaaatttgtaataatagaTTTATGGAAAAGGAACATTTAACCAATCATTTAAGAACACAcactggcgaaaaaccgtttaaaTGCGAactttgtgattataaatgtgcaaTCAAAGTGTACTTAAAGCtccatttaagaactcataccggcgagaaaccatttataTGTGACATTTGTGACTACAAAACTGCAGCTAATGGCAGATTAAAGCGACATATAATAAGCTGTCATACTAGCGAAAAAGGTTTTACGTGTGAGATTTGCGGTCATAAATTTGCACACAACAGTTATTTAAAGGAACATTTAATAACTCATGCTGCCGAGAAGTCTTTTGCATGTCAAATTTGTAGTAATAAATTTGCATCGAAACTAAGGTTAAGACAGCATTTGAAAATTCACAATGACCAGAAACCTTTTAGttgtgaaatttgtaattttaaatttagagatAATAGAGCTTTGAAGAGGCATATAAAGACTCATACTGGGGAAAAATCTTTCGAatgtgaaatttgcaaaaataagtttgcgGAAAAATCGGGTCTAAAAAggcatttaagaactcataccggggaGACGCCGTTTGCCTGTGACGCTTGTGGCACTAAATATGCAGAAAAGGCAACTTTAACAAAACATGTGATAAGGGTTCATACTGTCGAGAAACCCTTTGCTTGTGACATTTGTGAATATCAATGTGCAGTCAGATCCAGCTTAAAGAGACATATAAAAACTCACACCGGTGAGAAATTCTTTGCTTGCGAAAGTTGTGAATATAAATGTGTAGATAATCAGGGTTTAAAAAGGCATTTAAGAGTACACACTGGCGAGAAACGGTATGCCTGTGAAATGTGTGATTATAAGTGTACGGAGAACAGATATCTGCAAAGGCATATAAAAATTCATACGGACGAGAAATCACTTACgtgtaaaatttgcgactttAAATGTACCGAAAAAGCAACTTTAACGCAACACTTAAAAATTCATGTAGGAGAAAAATGCTTTACGTGTGAAATTTGTGCATTTAAATGTGCAGAGAAAGGCAGCTTAAAACGCCATTTAAGAACCCATACTGGCTTTAAACCCTTCGAGTGTGCAATGTGCGATTACAAAAGTGTAGAAAAGGCATCCCTGACGAAACATATAAGAACTCATGCTGGAGATAAACGCTACACCCCAATTAAGCCAGAACTAATAGAGTTCAAGGTGGAAGATCTGCCACAGGAAGAAACCCCGTGCCATTCAACTACCTACTTTAAAATTAAGACGGAAGTAATCGATGTCAAGTTGGACGGTTTGCACCATGCCGTTGACATCAAAGAAGATGCTGCAATTCCAGATGATCGACCGGATCAAGAATGCAAACAAAAAACCGGCAGGAAAGCATTATTcacatgtaaaatttgtaactatAAATGCGCACAGAAAAGACACCTAAAGTATCACTTACGAAGCCACACCGGGGAGAAGCCCTTTACATGTGAAATTTGTAACCGACAGTTTTCAATGAAAGGGGGGTTAAATAAGCATTTAATAATTCATACCGGCGTAAAACCGTTTGCATGCGAAATAtgtgattttaaatttgcactgcccggaaatttaaaaaaacacttgaTGAGGCATAGCGGGCAAAAACCCTTTAGGTGTGAACTTTGTGATTATGAATGTGCACGTAAAGATATGTTAACAAGACACCTACGGGCTCATACCGGTGTGAAACCTTACACATGTGAAGTTTGCAATCAAAAATATGCAGAAAAAAGAGGTCTGAAGAGACATTTAAGAACTCACACTGGTGAGAAGCcctttacatgtaaaatttgcgaatataaatttGCATACCAAGAAGAATTGAAAAGGCATTTGAAAGCCCATACCAGCGAGAAGCCTTACATGTGcgaaatttgtgactataaatgtaaAGACGAAAGAAATTTAAGAAGGCACGATTCTCCGTGCCATTCAAATAGCTACCCACAGGTTAAGACGGAGGTAATGGAGTTCAAGTTGGAAGATTTACATCATTCGATTGACATTAAAGAGGAAACTACAATTCTCGATGGTCAACCGAATCGAGAATGCAAATTAGAAGATAATAGCAAAAAACCTTTTAcatCCAAAGTAGATACACCAACGTTAAATCGCCAAATGGATCAAAATCACATTCAACAAAATGTGGAGCAAAATATGCTTAAAGCTTGGTATTTACCGAAAGACGAATGGGAAAAGCATATTGAAGCGAATTTTCAGTTCGAAATAGAAACAGAGGAAAAAGAACTTGTTCCGTGTGCTACTGCGGACCCCAAGGCTCCGATGACACACTGTAGAGTCTGTGGTGACAAATTTAGTGAGTATTTCGACGACGAAGATGACGAATGGAAATTGCGTAATGCAATCAGACGGAACAACTTTTTCTACCATCCAGTGTGCTTGGACGacatataa
Protein Sequence: MEALQIKTEVFEFKLEDLHHSIDIKEETDLPDREYKPEISTKPLFCEICNHESSTRGCLNRHLKTHTYDKPFTCAICNCNYAQKCSLRKHLKTHTGEKRFICKICNNRFMEKEHLTNHLRTHTGEKPFKCELCDYKCAIKVYLKLHLRTHTGEKPFICDICDYKTAANGRLKRHIISCHTSEKGFTCEICGHKFAHNSYLKEHLITHAAEKSFACQICSNKFASKLRLRQHLKIHNDQKPFSCEICNFKFRDNRALKRHIKTHTGEKSFECEICKNKFAEKSGLKRHLRTHTGETPFACDACGTKYAEKATLTKHVIRVHTVEKPFACDICEYQCAVRSSLKRHIKTHTGEKFFACESCEYKCVDNQGLKRHLRVHTGEKRYACEMCDYKCTENRYLQRHIKIHTDEKSLTCKICDFKCTEKATLTQHLKIHVGEKCFTCEICAFKCAEKGSLKRHLRTHTGFKPFECAMCDYKSVEKASLTKHIRTHAGDKRYTPIKPELIEFKVEDLPQEETPCHSTTYFKIKTEVIDVKLDGLHHAVDIKEDAAIPDDRPDQECKQKTGRKALFTCKICNYKCAQKRHLKYHLRSHTGEKPFTCEICNRQFSMKGGLNKHLIIHTGVKPFACEICDFKFALPGNLKKHLMRHSGQKPFRCELCDYECARKDMLTRHLRAHTGVKPYTCEVCNQKYAEKRGLKRHLRTHTGEKPFTCKICEYKFAYQEELKRHLKAHTSEKPYMCEICDYKCKDERNLRRHDSPCHSNSYPQVKTEVMEFKLEDLHHSIDIKEETTILDGQPNRECKLEDNSKKPFTSKVDTPTLNRQMDQNHIQQNVEQNMLKAWYLPKDEWEKHIEANFQFEIETEEKELVPCATADPKAPMTHCRVCGDKFSEYFDDEDDEWKLRNAIRRNNFFYHPVCLDDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -