Cfla021359.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:37581810-37600619[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-10 1.7e-07 31.9 0.0 1 40 18 57 18 61 0.93 2 2 9.6 3.9e+03 -1.2 0.0 28 38 149 159 148 164 0.80
Sequence Information
- Coding Sequence
- ATGGGGAGAAACTATAAACGAAAATTAGGTAGCAGGAGTTATGGTAATTTTTCAGAAGAACAGATAAACAATGCTTTAAAAGATGTTGTTGACAATGGAATGTCGCTACGCCAAGCTGCAAAAAAACATCATCTATCATTTGGTACCCTATATAATAGATATCATGGAAAAAGAATCAAGAAAACTGGTGGGCAAACAGTTCTATCTAAAACAGAAGAAGAAGTCATAATTAGTAGTGTCCTCAAATGTGCAGACTGGGGATACCCTCTGGATTCCATGGATTTACGAATGTTTGTGAAAAGCTACTTGGACAACTGTGAGCGGTCAGCGTCCCGATTTAAACAAAACCTCCCCGGAGGTGACTGGGTGCACAGCCTGTTAAAACGGCATAGGGATGTGGTGGGCAAGAGATTTGCAACCAATATTAAAGTTAATCGCGCTAGCGTATCTCGCGAAACACTACAAAagtattttaacaatttagaaGAAACCATCAATGGTGTACCACCCGAGAACGTATTCAATTATGATGAATCCAATGTGTCAGATGACCCTGGGAAAAAGCTCTGCATTTACAGGCGTGGTGTGAAATACCCGGAAAAAATTTGCAATCACTCCAAATCGGCAACGTCTATAATGATATGTGCATCTGGCTCTGGAGTACTCCTACCTccttatataatttataaggCGGAAAATTTATGGAATACGTGGATCGAAAACGGCCCGAAAGCACGATATAACAGAACTTCACATGGATGGATTGACATGCCCACATTCAATGATTGGTTTAGTACTGTCTTTATACCGCACGCAAAGCGTTTAGAAGGCAGGAAAGTCCTCTTGAGAGATAATTTAGCTTCTCATTTCAATCCCAATGTTCTGAAGCAATGTGAAGAACATAACATTGCCTTTACGTGCTTACCACCCAACTCGACACATATCTGTCAACCCCTTGACGTTGCGTTCTTCAGACCCTTCAAAGAAGCTTGGCGAAAAACACTAACGTCATGGAAAATTAAACATACCGAAAACGCAGGAGTACTACCTAAAAACGAGTTTCCCACGCTGCTACGTGAAACTTTGAATAATATGGACAAAGTACCACCAAAATCTCCAAACACGGAACTAAGTGCAGTAAAACGGAATGTTATTTCTGGTTTCAACGCTTGCGGAATTATTCCAATTGATGCTGATCGAGTTCTTTCCAAATTACCCCAGGAAGATGTTCAAATAGTAACTGATGCTGTTTCCACTACACTTACTGACTTTTTAAAATCCCAGAGGTTTGGGGATGGTTCTAGGAAGCCTAGGCAACGTAAAACAAAGTTGAGAGTGGAAGCAGGACGTAGTGTAGCGGCGCCATCAAACCGTGATGACTCGACTGATGACGGGGACGATGATGAAGGAGAAAACATTCAATTGAACAATGCAATTAGTGAAGAATCGCTGACGGCAGAAAACGAAGAATTAGAGTGTGAAATCAGTTATGAACAGCCAAACCGCGACAATGTGAAGTTAGGTGCCTTTATTCTGTGCAAATTTTTATCTGGAAAAAGGAAGAAAACTGAGTTTCGGTATGTGTGCATTGTACAAAGAGTGCTGGAAGACGGAGAAATTGAAGTTATTGGACTGAAATCTGTtgaatcaaaaaatgtttttaaagttgTCGAAAATGATTTATCTGCCGTACCATTCAATCATATAGTTGCCATATTACCGACacctaaaaatgaaaatgttggTCAAAGATTGGCTAGATATGTGTTTGAAGGTATTATTGATaGCGAAGATATATTGTCTTTCTTGTTTAAGTATCCAATCAGTAAACTAAATGCGGCAGAGGCGGCTCAGgtTGAAATGCTCATAACCACATTAAAAATACAGAAACCCGTTCTTAGAGCTTCTGATATTTTCACAGTTGGAACACGGCTCTTGGCGTCCTACAGCGACTGCGACTTGACAGCAGTTCGGACGAGCTGCGACTTAGAAGATGGTTCAAAGGATGTCGTTTTAGCGTCCAGCTACCTCCCAATCGATTCTCCGGAACTACCACCTTCTCGAAGGATGTTGGATCTGGTGAACTATTGcgagcaagaaaagaaacaccTCATCATTGGGTGCTACTCCAACTCCCATCATCAGGCATGGGGCAGTAGAGATTGCAACAATCGAGGTGAGTCTCTATTAGACTatcttattgatacaaatttagtaatacgtAATCGCGGAGATGTTCCTACTTTTTACATGTCACCCCACCGCAACTCGGTAATTGATATTACCGTAGCGTCATTAAGTATTTCTAATTACTTATGTGAATGGCAAGTGAccgaccaactgacaatgtTAGATCACAGAtggattttctttaaattaaaggaTAAAGTAATAGAACCCGAGCAatataggaatcctaggaatgcgAACAGGATGGTCTTTCTAGATCACCTGTCAACATCCATGGATTCTGAAGTGTTGAAGGGACTTTCCAACAAAGAAGAGTTAACAACTACTGAGGAAATTGAGATGTATGCTACTGAGCTACAAAACTCCCTCATAAACGCATATGAGCTGCCATGTCCGCTAAGAACGGCTGGACTGCGGGTTCGAGCAATGCCCTGGTGGTGCGAAGAACTCGACAAGCTAAGGAGAGCGACAAGAAAGCTCTATAATAAAGCTCGAAACTCCAAGAAGGACGACGACTGGACAGCGTTTAAGGCGCACCGGTCAGAGTTCAAGAGAGCAATCCGCAAGAAAGCCTTCTGCAGCGATGTTGAGACAACCACCGCTGCGGTTAGGCTAAACAAGATCATCGCAAAAGATCCATATCAGCAGCTCGGCAGCTTATGTCAAGAGGATGGGTCATACACAGATACCTTCTCACAAtctgccgaaatactgctacatACACACTTTCCCGATAGCCAAAGAGTCTCCGATTTCGATTGGACTGACACCATAAGTCAACCACCGACAGAGGCTGACTAA
- Protein Sequence
- MGRNYKRKLGSRSYGNFSEEQINNALKDVVDNGMSLRQAAKKHHLSFGTLYNRYHGKRIKKTGGQTVLSKTEEEVIISSVLKCADWGYPLDSMDLRMFVKSYLDNCERSASRFKQNLPGGDWVHSLLKRHRDVVGKRFATNIKVNRASVSRETLQKYFNNLEETINGVPPENVFNYDESNVSDDPGKKLCIYRRGVKYPEKICNHSKSATSIMICASGSGVLLPPYIIYKAENLWNTWIENGPKARYNRTSHGWIDMPTFNDWFSTVFIPHAKRLEGRKVLLRDNLASHFNPNVLKQCEEHNIAFTCLPPNSTHICQPLDVAFFRPFKEAWRKTLTSWKIKHTENAGVLPKNEFPTLLRETLNNMDKVPPKSPNTELSAVKRNVISGFNACGIIPIDADRVLSKLPQEDVQIVTDAVSTTLTDFLKSQRFGDGSRKPRQRKTKLRVEAGRSVAAPSNRDDSTDDGDDDEGENIQLNNAISEESLTAENEELECEISYEQPNRDNVKLGAFILCKFLSGKRKKTEFRYVCIVQRVLEDGEIEVIGLKSVESKNVFKVVENDLSAVPFNHIVAILPTPKNENVGQRLARYVFEGIIDSEDILSFLFKYPISKLNAAEAAQVEMLITTLKIQKPVLRASDIFTVGTRLLASYSDCDLTAVRTSCDLEDGSKDVVLASSYLPIDSPELPPSRRMLDLVNYCEQEKKHLIIGCYSNSHHQAWGSRDCNNRGESLLDYLIDTNLVIRNRGDVPTFYMSPHRNSVIDITVASLSISNYLCEWQVTDQLTMLDHRWIFFKLKDKVIEPEQYRNPRNANRMVFLDHLSTSMDSEVLKGLSNKEELTTTEEIEMYATELQNSLINAYELPCPLRTAGLRVRAMPWWCEELDKLRRATRKLYNKARNSKKDDDWTAFKAHRSEFKRAIRKKAFCSDVETTTAAVRLNKIIAKDPYQQLGSLCQEDGSYTDTFSQSAEILLHTHFPDSQRVSDFDWTDTISQPPTEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -