Cfla025043.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424438.1:22467560-22468129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-11 1.8e-08 35.1 0.0 1 40 18 57 18 61 0.93 2 2 1.3 5.2e+02 1.6 0.0 28 38 149 159 148 164 0.80
Sequence Information
- Coding Sequence
- ATGGGGAGAAACTATAAACGAAAATTAGGTAGCAGGAGTTATGGTAATTTTTCAGAAGAACAGATAAACAATGCTTTAAAAGATGTTGTTGACAATGGAATGTCGCTACGCCAAGCTGCAAAAAAACATCATCTATCATTTGGTACCCTATATAATAGATATCATGGAAAAAGAATCAAGAAAACTGGTGGGCAAACAGTTCTATCTAAAACAGAAGAAGAAGTCATAATTAGTAGTGTCCTCAAATGTGCAGACTGGGGATACCCTCTGGATTCCATGGATTTACGAATGTTTGTGAAAAGCTACTTGGACAACTGTGGACGGTCAGCGTCCCGATTTAAACAAAACCTCCCCGGAGGTGACTGGGTGCACAGCCTGTTAAAACGACATAGGGATGTGGTGGGCAAGAGCTTTGCAACCAATATTAAAGTTAATCGCGCTAGCGTATCTCGCAAAACACTACAAAAGTATTTCAACAATTTAGAAGAAACCATCAATGGTGTACCACCCGAGAACGTATTCAATTATGATGAATCCAATGTATCAGATGACCCTGGGAAAAAGCTCTGA
- Protein Sequence
- MGRNYKRKLGSRSYGNFSEEQINNALKDVVDNGMSLRQAAKKHHLSFGTLYNRYHGKRIKKTGGQTVLSKTEEEVIISSVLKCADWGYPLDSMDLRMFVKSYLDNCGRSASRFKQNLPGGDWVHSLLKRHRDVVGKSFATNIKVNRASVSRKTLQKYFNNLEETINGVPPENVFNYDESNVSDDPGKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -