Basic Information

Gene Symbol
nfxl1
Assembly
GCA_958496255.1
Location
OY292474.1:9918797-9921268[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2.9e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 16 0.014 2.1e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 16 3.1e-07 0.0045 17.7 15.9 3 19 186 202 185 202 0.95
4 16 5.9e-08 0.00085 20.0 14.0 3 19 239 255 237 255 0.91
5 16 3e-09 4.4e-05 24.1 13.7 1 19 290 308 290 308 0.99
6 16 6.4e-06 0.092 13.4 20.8 3 19 345 361 337 361 0.86
7 16 4.8e-07 0.0069 17.1 16.3 1 18 395 412 395 413 0.97
8 16 2.3e-08 0.00034 21.2 16.9 1 19 422 440 422 440 0.99
9 16 0.0002 2.9 8.6 6.4 9 19 488 498 486 498 0.89
10 16 0.00073 10 6.9 7.0 1 12 508 518 508 518 0.96
11 16 0.35 5e+03 -1.7 3.3 14 18 547 551 547 552 0.85
12 16 0.26 3.7e+03 -1.3 0.4 8 12 568 572 567 579 0.79
13 16 1.9e-05 0.28 11.9 5.1 1 11 588 598 588 599 0.97
14 16 0.75 1.1e+04 -2.7 1.3 15 18 613 616 612 617 0.83
15 16 7.6e-05 1.1 10.0 12.4 1 18 628 645 628 646 0.87
16 16 6.7e-07 0.0097 16.6 12.4 1 18 687 705 687 706 0.87

Sequence Information

Coding Sequence
ATGGCGCGCCGCTACAGAGACGCAGCCGCGAAGCTGCAGCAAAACGTGCAAAAGCATCTCAAGGACATGAAGGATCTGTCTTCTTCGGAAGACGAAGAGCCCTACGAGCCCAGCGTCATCGAGGGAATGTTCCAGAGCTATTGGCGAGGTGGCGGGGACACCCAGATGCTGAACAGAACAAAAAATCTTCTCGAAGAAGCCATCAGCGGCCGGTCGGCGGCTTGTCTCATTTGTATCAGTTCTATCAAGCGGACCCACGCCGTCTGGACGTGCGACCACTGCTACTCCTACTTCCATCTCTCCTGTATCCAAAAATGGGGTAACGATAGCATAAATCTGCGCAGCAGCGAACCCCAGGCTCCGATAAGCGTCTACAAACCTCAGAAGATCGAATGGTGCTGCCCGAAATGCCGCAATGCCTACAGCAAAGATGAAATACCTAGAAAGTACAGATGTTTTTGCGGTAAAACTGACAACCCGCCTGTTCACCCCTGGCTTATACCTCACACTTGCGGAGAGGTTTGTGAAAAGAGGCTATCTACCGGTGATAACTGTAAACATAAATGTTTGCTTCTGTGCCACCCTGGTCCATGCCCCCCTTGTCCGCAGACAGTCAACGGAATATGCTACTGTGAGAAAGAGCGTAAGAAAGTCAGATGCAGCTCAGCCAAGTGGTCGTGTGGCCAGCAGTGTAAGAGAACCTTGTTATGCCAAACACACAAATGTCAACTGCTATGCCACGAAGGAGAATGCCCGCCGTGCACTTACACCAGCACTCAGCCTTGCCAATGTGGAGCTGAGAGAACCAAACGACCCTGTGATGACCCCTTCTGGCATTGTACAAAAACTTGCAACAGACCGTTCTCCTGTGGCTATCATAAATGTGAGCAAGTTTGTCACTCGGGAAAATGTGGTGATTGCCCGAACTCAGGCATGAGATCCTGTCCGTGCGGAGCAAATTCGCGCTACGTCCAATGCCCTGATACTATGGAGACATGTCTCGGAACCTGTGGAAAGAAGCACCCTGACTGCGAACATAGCTGCCCGGAAAAAtgccataaaggcccttgcccACCCTGTCAAGTTCTCATCCAAAAGAACTGCCATTGCACAACCCATACAAGATCATTACCTTGCAGCAAAGAGTTTAAGTGTGATACAAAATGTAGAGGCACCCGACCGTGTGGTAAACATGCATGTGCTCGGAAATGCTGCAATGGAAACTGTCCTCCATGCGAAAAGGCTTGTGATAAGCCATTACAGTGTGGTCGCCATAAATGCACCACCATCTGCCACCATGGCCCTTGCTACCCATGCCCATTGGAGTCCAAAATCAGCTGCAGATGCAAGGAAACCTATGTGACAGTTCCTTGCGGAAGAGAAAGGTTCACAAAACCTCCAAAATGCCATCTCCCATGCAAGTTGAAGTACAAATGTGGACACTCAGATGAAAATAAACATTCCTGTCATTTCGGAGACTGTCCACCATGTAAAGCGATCTGCTACAAAACCTACTCCAAATGTGGTCACGAATGCAAAGCAATATGCCACGAGTACAAAGCTGTGGTCTTCAAACAGATTGAGAAACCTGCAACTCCTTGGGAAGTCCAGCCTCCGAAGACAAAGATCATGACTTTAGAATGTCCTCCATGTAACACACCAGTCACTATAATTTGTTTTGGAGAACATGAGACCGACGACCAGCCATGTCACACTGCCTCCAGAAGACCATGTGGAAGAGAATGCGGGAAACCCTTAACCTGTGGAAACCATAACTGCACTTTACTCTGTCATCTGTACAACCCTGATCCAGAATACCCAAACGTACCCTTCAAATGCAGGCCGTGTGATCGAGAATGTCTGAAACCTCGTCCCGAAAAATGCTCTCACAAATGCTCTATGAAAGCTTGTCATCCAGGACCTTGCCTGCCATGTGATGCCTTCGAACGCATCCCATGCCATTGTGCTGTCACCGAGCTGTACTTACGATGTAGAGAATACAGTACAGAAACAGAAGAAATGTTGTCTTGCAAGCAACAGTGCCCTAGAAACTTAGAATGTGGGCATCGCTGCAAAAATACTTGCCATTCTGGACCTTGCAGCAATCAAGTATGCACAAAAAAGACTAAGATACACTGTCCTTGTGGGAACTTAAAGAAAGACGCTCCTTGCAACACGGTCAAAAGCGGAGAAGCTAAAGTCTCATGTGAGGCATCATGTGAAGAGAAAAAGGTCGCAGCTAAGTTAGAGAGTGAGAGAGAACAGCAGAGACTCAAGGCATTAGAAGAGGAGAGGAATAAGAAGGAACTGGCTGAATACGAGTGGAAACTCAGTGGGAAAAAGAAGAAATACAAAGAGAAGAAGGTCGCGATAAATAAGGATGAAAGGAACTGGGTTCATCGACACTGGATGATTATTCTGGCTGTTTTGTTTGCGCTGCTGGCAGTGGGTTATGTTATTATTTCAGTTTAA
Protein Sequence
MARRYRDAAAKLQQNVQKHLKDMKDLSSSEDEEPYEPSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSAACLICISSIKRTHAVWTCDHCYSYFHLSCIQKWGNDSINLRSSEPQAPISVYKPQKIEWCCPKCRNAYSKDEIPRKYRCFCGKTDNPPVHPWLIPHTCGEVCEKRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGICYCEKERKKVRCSSAKWSCGQQCKRTLLCQTHKCQLLCHEGECPPCTYTSTQPCQCGAERTKRPCDDPFWHCTKTCNRPFSCGYHKCEQVCHSGKCGDCPNSGMRSCPCGANSRYVQCPDTMETCLGTCGKKHPDCEHSCPEKCHKGPCPPCQVLIQKNCHCTTHTRSLPCSKEFKCDTKCRGTRPCGKHACARKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPLESKISCRCKETYVTVPCGRERFTKPPKCHLPCKLKYKCGHSDENKHSCHFGDCPPCKAICYKTYSKCGHECKAICHEYKAVVFKQIEKPATPWEVQPPKTKIMTLECPPCNTPVTIICFGEHETDDQPCHTASRRPCGRECGKPLTCGNHNCTLLCHLYNPDPEYPNVPFKCRPCDRECLKPRPEKCSHKCSMKACHPGPCLPCDAFERIPCHCAVTELYLRCREYSTETEEMLSCKQQCPRNLECGHRCKNTCHSGPCSNQVCTKKTKIHCPCGNLKKDAPCNTVKSGEAKVSCEASCEEKKVAAKLESEREQQRLKALEEERNKKELAEYEWKLSGKKKKYKEKKVAINKDERNWVHRHWMIILAVLFALLAVGYVIISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_00661917;
80% Identity
-