Cbil025273.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:5150454-5175394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5 1.7e+02 3.6 3.0 2 23 230 252 229 252 0.71 2 15 0.22 15 6.9 0.8 1 23 257 279 257 279 0.88 3 15 0.00012 0.0085 17.1 0.7 2 23 285 306 284 306 0.96 4 15 1.7 1.2e+02 4.1 3.5 1 23 313 336 313 336 0.94 5 15 0.00081 0.055 14.6 1.5 1 23 342 364 342 364 0.98 6 15 0.43 30 6.0 9.4 1 23 370 393 370 393 0.95 7 15 0.65 45 5.4 1.5 2 23 445 467 444 467 0.71 8 15 0.0076 0.52 11.5 0.8 1 23 472 494 472 494 0.98 9 15 0.00053 0.036 15.2 0.4 2 23 500 521 499 521 0.96 10 15 1.7 1.2e+02 4.1 3.5 1 23 528 551 528 551 0.94 11 15 2e-05 0.0014 19.7 1.4 1 23 557 579 557 579 0.95 12 15 2.4 1.6e+02 3.7 0.4 5 23 762 780 761 780 0.94 13 15 0.00053 0.036 15.2 0.4 2 23 786 807 785 807 0.96 14 15 0.055 3.7 8.8 5.7 1 23 814 837 814 837 0.94 15 15 0.0011 0.077 14.1 1.0 1 23 843 865 843 865 0.95
Sequence Information
- Coding Sequence
- ATGTCGTGCACTGAACCTCAAATAACCAAAGTACAAACGAAGATAAGCAACTCACCAGGCACCTGTAGAGTTTGTATGAGAAAAAACAATTCGATGAAACAACTGTTTGGTTCCGATTGTGAAATTGTGGATAGAATCCAGTTTTGTACCGGAATACTTTTTACAGAAAACCCCATTTTACCCTCATTTATCTGCACAGAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACGTGTATCGCATCGgaagaaatattaaaaaaactggaTGACAAAGTAGAAATAAAGAAAGAGATATTGgatgatgtagcgacatctaccggtcggtcgaaagaccacgggcaagtgggcgagatgggccggcccgttgcagaggaaccacccactctgcctttggggaacgattccacacTGTTCCCCAAAGATGATACAACTGTGAAGCAGGAAACTGAGGATATGTATGAGGATGAAGTTGAGATTGAGGATTTTAAAGAGGATGTAAGGCTACTTATAGAAGAAAACTCAAATTCtaccaaaaaaattataacacgTAGCATGAATTCTACTAAAATGTTTAGTCTAAAATATACTGCGAATACTAAAGAACTGAAAGTTAAATGCAAAGGGAAAAAGAAGGCCCcacaaaaaaaaggaaaaagcaTTGCATTTAATAGACTCCACTGCAGCAAGTGCAACATTAGGTTTGAAACCAGAGAGGAGTCTCTTGAACACCACGAGAGATTACATAACATATTGAAATATATCTGCGAGGTTTGTGGCAAACAGTTTTTAACCCAAGGGGCCCACCACGCGCATATAAGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATACACCACTGTCACCAAGTCGGATCTGAGGAGGCACATCGCAATACACACAGGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACATCTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGCTATTCTTAGACAACATATCGACACGCATAACAACGTTAGGAGTCACGAATGTCCAGTTTGCCACAAGTTCTTAAGCCGCCGCTATCACTTGAAGTGTCACCTGCTAAAACAGCACGCGATACAAATCCCGCAATTGAAGAACGGCCGACCACGCCAAACTAGGAGACTGGCTGAGAAGAGTTTGTTAGCTAATGCAATAAATGTTCAGAACAAAGGGAAAAAGAAGGCCCcacaaaaaaaaggaaaaagcaTTGCTTTTAATAAACTCTACTGCAGCAAGTGCAACATTAGGTTTGAAACCAGAGAGGAGTCTCTTGAACACCACGAGAGATTACATAACATATTGAAATATATCTGCGAGGTTTGTGGCAAACAGTTTTTAAACCAAGGGGCCCACCGCACGCATATGCGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATACACCACTGTCAGCAAGGGGGATCTGAGGAGGCACATCGCAATACACACagGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACATCTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGTTAATCTTAGACAACATATCGACGCGCATAACAACGTTAGGAGGGTCAGTACCAAAACTACCAGGCGCCGCCGTCTAACAGCGCCAGGCGAGGATTTCTGCGTGGTTACCAGGCAAGAGGCAGCCGTGGCTCGTCTCGAGGTCATCAAAATCATGGTAAGTCACGTCAAAATAGGCAGCAGGTTCACTACGCCACCCACGCTGCCGGGGAGAACGCCCAAGCTTCAGTTTACAGAAAACCCCATTTTACCCTCATTTATCTGCACAGAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACGTGTATCGCATCGgaagaaatattaaaaaaactggaCAACAAAGTAGAAATAAAGAAAGAGATATTGgatgatgtagcgacatctaccggtcggtcgaaagaccacgggcaagtgggcgagatgggccggcccgttgcagaggaaccacccactctgcctttggggaacgattccacacTGTTCCCCAAAGATGATACAACTGTGAAGGAGGAAACTGAGGATATGTATGAGGATGAAGTTGAGATTGAGGATTTTAAAGAAGATGTTTGTGGCAAACAGTTTTTAAACCAATGGGCCCACCGCACGCATATGCGCATCCATTACGGACCCACATTAGAGTGTGCGCACTGCTCATACACCACTGTCAGCAAGGGGGATCTGAGGAGGCACATCGCAATACACACagGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACGACTTGCGCCATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGCTATTCTTAGACGACATATCGACGCGCATAACAACGTTAGGAGATCTAGCTGCGACAAGAATTTCAATGGACACCGGTTTAAACCGCAATGA
- Protein Sequence
- MSCTEPQITKVQTKISNSPGTCRVCMRKNNSMKQLFGSDCEIVDRIQFCTGILFTENPILPSFICTECLSQLDIAHNFKTTCIASEEILKKLDDKVEIKKEILDDVATSTGRSKDHGQVGEMGRPVAEEPPTLPLGNDSTLFPKDDTTVKQETEDMYEDEVEIEDFKEDVRLLIEENSNSTKKIITRSMNSTKMFSLKYTANTKELKVKCKGKKKAPQKKGKSIAFNRLHCSKCNIRFETREESLEHHERLHNILKYICEVCGKQFLTQGAHHAHISIHYGPSLECAHCSYTTVTKSDLRRHIAIHTGEKKKYHCHACPGTYRTSYILRNHIMFKHGGQRTFPCDRCDKSFHTKAILRQHIDTHNNVRSHECPVCHKFLSRRYHLKCHLLKQHAIQIPQLKNGRPRQTRRLAEKSLLANAINVQNKGKKKAPQKKGKSIAFNKLYCSKCNIRFETREESLEHHERLHNILKYICEVCGKQFLNQGAHRTHMRIHYGPSLECAHCSYTTVSKGDLRRHIAIHTGEKKKYHCHACPGTYRTSYILRNHIMFKHGGQRTFPCDRCDKSFHTKVNLRQHIDAHNNVRRVSTKTTRRRRLTAPGEDFCVVTRQEAAVARLEVIKIMVSHVKIGSRFTTPPTLPGRTPKLQFTENPILPSFICTECLSQLDIAHNFKTTCIASEEILKKLDNKVEIKKEILDDVATSTGRSKDHGQVGEMGRPVAEEPPTLPLGNDSTLFPKDDTTVKEETEDMYEDEVEIEDFKEDVCGKQFLNQWAHRTHMRIHYGPTLECAHCSYTTVSKGDLRRHIAIHTGEKKKYHCHACPGTYRTSYDLRHHIMFKHGGQRTFPCDRCDKSFHTKAILRRHIDAHNNVRRSSCDKNFNGHRFKPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -