Cbil000584.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:5280403-5305043[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.9 2.7e+02 3.0 0.8 9 23 2 17 1 17 0.92 2 19 5.6 3.8e+02 2.5 2.1 1 23 21 43 21 43 0.96 3 19 0.0071 0.48 11.6 2.0 1 23 48 71 48 71 0.96 4 19 0.022 1.5 10.1 0.6 3 23 112 133 111 133 0.98 5 19 1.3 92 4.5 0.8 1 21 141 161 141 165 0.91 6 19 0.071 4.9 8.5 5.5 1 23 241 263 241 263 0.95 7 19 0.006 0.41 11.9 1.1 1 23 269 291 269 291 0.96 8 19 0.00031 0.021 15.9 0.4 1 23 296 318 296 318 0.98 9 19 0.004 0.27 12.4 1.8 1 23 324 347 324 347 0.96 10 19 0.59 40 5.6 4.6 1 23 679 701 679 701 0.96 11 19 0.43 29 6.0 0.4 1 23 708 731 708 731 0.90 12 19 0.0045 0.3 12.3 1.2 1 23 762 784 762 784 0.98 13 19 3.2 2.2e+02 3.3 0.2 2 23 792 814 791 814 0.95 14 19 0.0044 0.3 12.3 0.1 2 23 827 849 826 849 0.92 15 19 0.021 1.4 10.1 1.2 1 20 856 875 856 880 0.93 16 19 0.0059 0.4 11.9 0.1 3 23 956 976 955 976 0.98 17 19 0.017 1.2 10.4 0.9 1 23 982 1004 982 1004 0.95 18 19 9.5e-05 0.0065 17.5 6.8 1 23 1009 1031 1009 1031 0.98 19 19 0.03 2 9.7 0.9 1 23 1037 1060 1037 1061 0.96
Sequence Information
- Coding Sequence
- ATGCGATTCGTCTCGAAGTCAACTTACAAAGCGCATCGGAAGAACAATCACACCGTGGTCTACACATGTCGACAATGTCCCGTGGTCACATATCATTTCTCTGTGATGTTAAACCATTACAACCAACATAAAGGCGTGGAATACCATTGTCCAACATGCTTGAGCGTCTACACTAACAAGACAACATTGAACAACCACCGTCGCGAGGCGCACGCCACATCGCACATCTGTACGGCGTGCGCTCGCAGCTTCGTGTCCGAGAAAGGACTGTTCTTCCACAAGAAATACAAACATAAGGACGAGGCGGAGGCGAACCCCGCGGAGGCGACGTTGTGTACGGAATGCAACATCACATTCGACTCGCACGCCGTCTACCTGCGGCACGCCAGGACGGCGCACACACGACGACCTGAGACTGTATACAAATGCTACTTCTGTAAAGACGGCTTCGACAGCATCGAAGCGCTTCGCAAACACAAGCTGGAATTAAATCACCAGAGGGCGCCGAAACAGGTGATACACCGTACATCTATAGGCGCTAAGCCGAGAGGTGCAAAAAGAACCAGGCGCACGCGGGTCAGTGACCCCGACAAGCCGTACAGGAAGTGTCCAGTCTGCCTAGTAGAAGTTCCGAACACGTTCCGAACTAGTCTGTACATGCACTATCAGGAGGCGCATCCGGACGTACCGTACAACTCACTGTACACGGACTCAAAGGACTATCTGTGCGAGCAGTGCGGCAAGACATTCCGGGTATACTGCCATTACCTCGACCATAAAAACCAGCACACGGGGGCGAAGCCCTACGCATGTAAAGAATGTCCCGCGCAATTCGCGACACGGAAGCACCTTGTATACCACTCTGAGAGACATCGCCCGCCTCGCTACCAGTGCAAACAGTGCGGGAAGCTGTTCCTTAGCGCCGCTAACCTGTTCGCGCACCGCCGGGGCCACATCGGTGACCGGCGGTTCAAATGCGAGATCTGCTTCAAAGGTTTCCTGCATTCGTACACACTTAAAGAACACATCAAGGGAGTCCACAACCAAATTAGAAGAACGTACGAGAATCAGAGCCTGATGTATTGCCGGCTGTGCGAGCACCAGCTGCGCAAGTGTTACAGCTTCAAGCAGAGGTGTCTCCGAGCCAACGCACTGATCAAGGCATGGCGGAAGAAAGGGATGGCgATATTTCCAAAAACCCTCCACGTCCTtcttcccccctcccccctcagcTACTGTTCCCCCGCCGCCCGCCACCGCACCACAGAGTACATATACTCGGACCACGGACCCGCGCCGACCGAGTCGGACCTGCGGCACCTGCTCGAATCACAGGACTCGAATGACGCGGAGAATGTACCGCTGAGTTGTATGCGGATGACCGATATAGGTATAGACTTAAAAGAGCTGGAGTTAGATCTGAAGGAAGAAAATGATGGCGCCATGTCCGAGGGTAGCGGATTCGGATCCGATGACGTCGACAGCGACCTAGAACAAATTATGgacagATACATCAAAACAGAATTGAAAAAACCAAACACACGCTCAAAAAGTAAAACATCGAAGtcaaaacaaaaatcaaagaGAATTGAACCGAAACAAACAAAGAAGAGCAAAGTTAAAACGAAAATTGAATTCGCCGATGTTGATGGAGACAACGATGTGGAAAATGACGTCGATGCTAATAACGACATCGATGTAAACGATGTCGATGTGAATGACATCGATGTAAACGATATTGATGTAAATACTGAAGTAGAAACTAAGTTAGAATTAGACGACAAATCACCACAAGCAGACAAGAAATACATCAACATAAAACAGAGAGTCGTCGAAATATTAGACCGCGGCGAAATACACGAGCTGGCGGACAATGTGAAGATTACTAAAGAAGTATTCAACAAGATATACAATAACTTCCTTCTGTCCGATATGAGGATGTTGTCGTTGAAGAAAGAATACCTAGATACAGAAGAGAAGAAGCTAGCGGAGTTCAACCGACGGAAACACAGTCAGAGCTATATGGAAGCGAAGTATAAATGTGAGCTGTGCTACCGCGGCTTCGAGAAACACACACAGTACCAGTATCATAACAAGTGGCACACGCCAGCGGCCGGCGAGTTCCTATGCGGTATATGTGGCATGCGGTTTCAATCCCTGAAGACTCGCGCGAGCCACCGAGCCTCATCGCATTCCGCCGTCTACTGCTGTAAAATGTGCCCACTCATCACATACCACTACCCTGTCATGTTGAATCATTACGAGCAACACAAAGGTGTAGAGTACTCCTGTCCCACATGCCTTAGCGTATTCGAGAATAAAACAACGTTTATGAACCACCAACGCGATCACAACGCTGACAAGAAGAAATCCACCTGCGCTTCGTGTGCCATGACCTTTATATCAGATGTAGGCCTCATGCTGCACCGGAAGTCTAAACACACGgAGGATGTGCCAGTGAACCCAGGCGCCCACTCCACATGTCAAGAGTGCGGTATCACATTCGACACCGCAGATGTTTACAGAAAGCACGTATCTCTAGCACACACCAAGAAAGTCGAATCTCACCGCTGCGCCTACTGTCACATCCGCTTCGGGACCCTAGAGGAGCTTAGGACGCACAAGGTGGAGCAAGGCCACCAGCGCGCGTCCAAGAAGTACGCGCAACGATGGCTGCGGACCAACGACGTCAATCCAGTCAAAAAGATCAAAATCAACACGCCCGATAAACCATTCATTAAGTGTGAGCTGTGTCCCGCCATGGTTTCAACAGCGTTCACTTCGTGTATGTACAAGCATTTCCTAAAGGACCATCCAGACATCCCCTACTCGTCCGTCTACTCGCAAACCGCCAGAAGACTGCTCTGCGACTTGTGTGGCAAGACCTTTATGGACCCGGCATTTTTCGCCGACCACGCGAACATGCACTCGGGGGCGAAGCCCTACCTGTGCTCGCAGTGCCCCGCGCGCTTCGCGACGCGCCGCCACCTCGGGCTGCACGCGCAGCGGCACGGGCCCGCCCGGCACGTCTGCAACCACTGCGGCAAGAGGTTCCATAGCGCGGCCAACCTATACAACCATCGGAAGACGCACATCGGCGATCGCCGCTTCAAATGCGAGATCTGCCTGAAGGGTTTCCTTCACGCCGCCACTCTCAACGAGCACGTCCGCGGCGTGCACCATCACATACGCAAACAGAAGCCGCCGCGGGACCGCAAGATCAGCTACTAA
- Protein Sequence
- MRFVSKSTYKAHRKNNHTVVYTCRQCPVVTYHFSVMLNHYNQHKGVEYHCPTCLSVYTNKTTLNNHRREAHATSHICTACARSFVSEKGLFFHKKYKHKDEAEANPAEATLCTECNITFDSHAVYLRHARTAHTRRPETVYKCYFCKDGFDSIEALRKHKLELNHQRAPKQVIHRTSIGAKPRGAKRTRRTRVSDPDKPYRKCPVCLVEVPNTFRTSLYMHYQEAHPDVPYNSLYTDSKDYLCEQCGKTFRVYCHYLDHKNQHTGAKPYACKECPAQFATRKHLVYHSERHRPPRYQCKQCGKLFLSAANLFAHRRGHIGDRRFKCEICFKGFLHSYTLKEHIKGVHNQIRRTYENQSLMYCRLCEHQLRKCYSFKQRCLRANALIKAWRKKGMAIFPKTLHVLLPPSPLSYCSPAARHRTTEYIYSDHGPAPTESDLRHLLESQDSNDAENVPLSCMRMTDIGIDLKELELDLKEENDGAMSEGSGFGSDDVDSDLEQIMDRYIKTELKKPNTRSKSKTSKSKQKSKRIEPKQTKKSKVKTKIEFADVDGDNDVENDVDANNDIDVNDVDVNDIDVNDIDVNTEVETKLELDDKSPQADKKYINIKQRVVEILDRGEIHELADNVKITKEVFNKIYNNFLLSDMRMLSLKKEYLDTEEKKLAEFNRRKHSQSYMEAKYKCELCYRGFEKHTQYQYHNKWHTPAAGEFLCGICGMRFQSLKTRASHRASSHSAVYCCKMCPLITYHYPVMLNHYEQHKGVEYSCPTCLSVFENKTTFMNHQRDHNADKKKSTCASCAMTFISDVGLMLHRKSKHTEDVPVNPGAHSTCQECGITFDTADVYRKHVSLAHTKKVESHRCAYCHIRFGTLEELRTHKVEQGHQRASKKYAQRWLRTNDVNPVKKIKINTPDKPFIKCELCPAMVSTAFTSCMYKHFLKDHPDIPYSSVYSQTARRLLCDLCGKTFMDPAFFADHANMHSGAKPYLCSQCPARFATRRHLGLHAQRHGPARHVCNHCGKRFHSAANLYNHRKTHIGDRRFKCEICLKGFLHAATLNEHVRGVHHHIRKQKPPRDRKISY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -