Cbil025275.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:5187239-5230293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.6 2.4e+02 3.1 0.4 5 23 49 67 48 67 0.94 2 23 0.00079 0.054 14.6 0.4 2 23 73 94 72 94 0.96 3 23 0.083 5.6 8.3 5.7 1 23 101 124 101 124 0.94 4 23 0.0032 0.22 12.7 1.6 1 23 130 152 130 152 0.95 5 23 0.65 44 5.5 9.4 1 23 158 181 158 181 0.95 6 23 0.00019 0.013 16.6 0.7 2 23 288 309 287 309 0.96 7 23 2.6 1.8e+02 3.6 3.5 1 23 316 339 316 339 0.94 8 23 0.0012 0.083 14.0 1.5 1 23 345 367 345 367 0.98 9 23 3.8 2.6e+02 3.0 3.0 2 23 608 630 607 630 0.71 10 23 0.011 0.78 11.0 0.8 1 23 635 657 635 657 0.98 11 23 0.00079 0.054 14.6 0.4 2 23 663 684 662 684 0.96 12 23 0.012 0.82 10.9 4.2 1 23 690 713 690 713 0.94 13 23 9.3e-06 0.00063 20.7 2.3 1 23 719 741 719 741 0.98 14 23 0.65 44 5.5 9.4 1 23 747 770 747 770 0.95 15 23 0.00033 0.023 15.8 0.5 2 23 877 898 876 898 0.96 16 23 2.6 1.8e+02 3.6 3.5 1 23 905 928 905 928 0.94 17 23 3e-05 0.002 19.1 1.4 1 23 934 956 934 956 0.95 18 23 0.65 44 5.5 9.4 1 23 962 985 962 985 0.95 19 23 1.4 94 4.4 0.6 5 23 1110 1128 1109 1128 0.95 20 23 9.8e-05 0.0067 17.5 1.1 2 23 1134 1155 1133 1155 0.97 21 23 0.16 11 7.4 4.4 1 23 1161 1184 1161 1184 0.94 22 23 0.1 6.8 8.0 2.1 1 23 1190 1212 1190 1212 0.92 23 23 0.00039 0.026 15.6 6.1 1 23 1218 1241 1218 1241 0.96
Sequence Information
- Coding Sequence
- ATGGGccagcccgttgcagaggaaccacccactctgcctttggggaacgattccacacTGTTCCCCAAAGATGATACAACTGTGAAGGAGGAAACTGAGGATATGTATGAGGATGAAGTTGAGATTGAGGATTTTAAAGAGGATGTTTGTGGCAAACAGTTTTTAAACCAATGGGCCCACCGCACGCATATGCGCATCCATTACGGACCCACATTAGAGTGTGCGCACTGCTCATACACCACTGTCAGCAAGGGGGATCTGAGGAGGCACATCGCAATACACACagGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACGACTTGCGCCATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAAATATTCTTAGACGACATATCGACGCGCATAACAACGTTAGGAGtCACGAATGTCCAGTTTGCCACAAGTTCTTAAGCCGCCGCTATCACTTGAAGTGTCACCTGCTAAAACAGCACGCGATACAAATCCCGCACTTGAAGTACGGCCGACCATGCCAAACTAGGAGACTGGCTGAGGAGAAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACATGTATCGCATCAgacgaaatattaaaaaaactggaCGACAAAGTAGAAATAAAGAAAGAGATAAATGATACAACTATGAAGGAGGAAATTGAGAATACATATGAGGATGAGGTTGAGATTGAGGATTTTAAAGAGGATGTTTGTGGCAAACAGTTTTTAACCCAAGGGGCCCACCACGCGCATATAAGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATACACCACTGTCACCAAGTCGGATCTGAGGAGGCACATCGCAATACACACAGGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACATCTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGCTATTCTTAGACAACATATCGACACGCATAACAACGTTAGGAGctTGGAAGTTCGAAGAGCGAACGACCAGTTGATTACCATGTGCAAGGTTCTCCGTGGTAAGATCGATGCTCCTGATCTCCATGACGATTTGGCAAGGCTCTACGTCCCCGACAACTATTACCGTAACAGAAGGCACCGGCTGTTCCAGGAACCTTCCTGTCGCACGGTCGCGCATGCCCAGTCTCCCATTCCTCGTACTCTTTCTGCGCTCAATGACCTCTTGAATGAGAACCCTGAATGCGATGTGTTTGTGGATGGATGGAAGGAAATTCTGTCTGCATGTCTGAAGTTCTGTGAGAAGTCTTTTACAGAAAACCCCATTTTACCCTCATTTATCTGCACAGAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACATGTATCGCATCAgacgaaatattaaaaaaactggaCGACAAAGTAGAAATAAAGAAAGAGATAAATGATACAACTATGAAGGAGGAAATTGAGGATATATATGAGGATGAGGTTGAGATTGAGGATTTTAAAGAGGATGTAAGGCTACTTATAGAAAAAAGCCCAAATTCtaccaaaaaaattataacacgTAGCATGAATTCTACTAAAATGTTTAGTCTAAAATATACTGCGAATACTAAAGAACTGAAAGTTAAATGCAAAGGGAAAAAGAAGGCCCcacaaaaaaaaggaaaaagcaTTGCTTTTAATAGACTCCACTGCAGCAAGTGCAACATTAGGTTTGAAACCAGAGAGGAATCTCTTGAACACCACGAGAGATTACATAACATATTGAAATATATCTGCGAGGTTTGTGGCAAACAGTTTTTAAACCAAGGGGCCCACCGCACGCATATGCGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATACACCACTGTCAGCAAGGGGGATCTGAGGAGGCACATCGCAATACACACagGTGAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACAACTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGTTAATCTTAGACAACATATCGACACGCATAACAACGTTAGGAGTCACGAATGTCCAGTTTGCCACAAGTTCTTAAGCCGCCGCTATCACTTGAAGTGTCACCTGCTAAAACAGCACGCGATACAAATCCCGCAATTGAAGAACGGCCGACCACGCCAAACTAGGAGACTGGCTGAGAAGAAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACATGTATCGCATCAaacgaaatattaaaaaaactggaCGACAAAGTAGAAATAAAGAAAGAGATCGATGAGACAACTGTGAAGGAGGAAATTGAGGATATATATGAGGATGAGGTTGAGATTGAGGATTTTAAAGAGGATGTTTGTGGCAAACAGTTTTTAACCCAAGGGGCCCACCACGCGCATATAAGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATACACCACTGTCAGCAAGGCGAATCTGAGGAGGCACATCGCAATACACACAGGTGAGAAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATCCTACATCTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAGGACATTCCCTTGCGACCGCTGCGATAAGAGCTTCCACACCAAAGTTAATCTTAGACAACATATCGACGCGCATAACAACGTTAGGAGTCACGAATGTCCAGTTTGCCACAAGTTCTTAAGCCGCCGCTATCACTTGAAGTGTCACCTGCTAAAACAGCACGCGATACAAATCCCGCACTTGAAGAACGGCCCACCAAGCCGAACTAGGAGACTGGCTGAGGAGAAATGCCTCTCACAGTTAGATATAGCTCACAACTTCAAAACAACGTGTATCGCATCGgaagaaatattaaaaaaactggaTGACAAAGTAGAAATAAAGAAAGAGATATTGgatgatgtagcgacatctaccggtcggtcgaaagaccacgggcaagtgggcgaGATGGGccagcccgttgcagaggaaccacccactctgcctttggggaacgattccacacTGTTCCCCAAAGATGATACAACTGTGAAGGAGGAAACTGAGGATATGTATGAGGATGAAGTTGAGATTGAGGATTTTAAAGAGGATGTTTGTGGCAAAGTGTTTTTAAACCAAGGGGCCCACTGCACGCATATGCGCATCCATTACGGACCCTCATTAGAGTGTGCGCACTGCTCATATACCACTGTCACCAAGTCGGATCTGAGGAGGCACATCGCAACACACACAGATGAGAAGAAATACCATTGCCACGCGTGTCCGGGGACATACCGTACATTCAACAACTTGCGCAATCACATCATGTTTAAACACGGGGGACAGAAGACATTCCCTTGCGACCGCTGCCATAAGAGCTTCCACACCAAAGTTATTCTTGGACGACATATCGACGCGCATGACAACGTTAAACGTCACGAATGTCCAGTTTGCCACAAGTTCTTAAGCCGCCATGATAACTTGAAGCGTCACCTGCTGAAACAACACGCGATACAAATCCCGCAATTGAAGAACGGCCGACCACGCCAAACTAGGAGACTGGCTGAGGAGAGTTTGTTAGATCCTGCAATAAATGTTCAGTAG
- Protein Sequence
- MGQPVAEEPPTLPLGNDSTLFPKDDTTVKEETEDMYEDEVEIEDFKEDVCGKQFLNQWAHRTHMRIHYGPTLECAHCSYTTVSKGDLRRHIAIHTGEKKKYHCHACPGTYRTSYDLRHHIMFKHGGQRTFPCDRCDKSFHTKNILRRHIDAHNNVRSHECPVCHKFLSRRYHLKCHLLKQHAIQIPHLKYGRPCQTRRLAEEKCLSQLDIAHNFKTTCIASDEILKKLDDKVEIKKEINDTTMKEEIENTYEDEVEIEDFKEDVCGKQFLTQGAHHAHISIHYGPSLECAHCSYTTVTKSDLRRHIAIHTGEKKKYHCHACPGTYRTSYILRNHIMFKHGGQRTFPCDRCDKSFHTKAILRQHIDTHNNVRSLEVRRANDQLITMCKVLRGKIDAPDLHDDLARLYVPDNYYRNRRHRLFQEPSCRTVAHAQSPIPRTLSALNDLLNENPECDVFVDGWKEILSACLKFCEKSFTENPILPSFICTECLSQLDIAHNFKTTCIASDEILKKLDDKVEIKKEINDTTMKEEIEDIYEDEVEIEDFKEDVRLLIEKSPNSTKKIITRSMNSTKMFSLKYTANTKELKVKCKGKKKAPQKKGKSIAFNRLHCSKCNIRFETREESLEHHERLHNILKYICEVCGKQFLNQGAHRTHMRIHYGPSLECAHCSYTTVSKGDLRRHIAIHTGEKKYHCHACPGTYRTSYNLRNHIMFKHGGQRTFPCDRCDKSFHTKVNLRQHIDTHNNVRSHECPVCHKFLSRRYHLKCHLLKQHAIQIPQLKNGRPRQTRRLAEKKCLSQLDIAHNFKTTCIASNEILKKLDDKVEIKKEIDETTVKEEIEDIYEDEVEIEDFKEDVCGKQFLTQGAHHAHISIHYGPSLECAHCSYTTVSKANLRRHIAIHTGEKKKYHCHACPGTYRTSYILRNHIMFKHGGQRTFPCDRCDKSFHTKVNLRQHIDAHNNVRSHECPVCHKFLSRRYHLKCHLLKQHAIQIPHLKNGPPSRTRRLAEEKCLSQLDIAHNFKTTCIASEEILKKLDDKVEIKKEILDDVATSTGRSKDHGQVGEMGQPVAEEPPTLPLGNDSTLFPKDDTTVKEETEDMYEDEVEIEDFKEDVCGKVFLNQGAHCTHMRIHYGPSLECAHCSYTTVTKSDLRRHIATHTDEKKYHCHACPGTYRTFNNLRNHIMFKHGGQKTFPCDRCHKSFHTKVILGRHIDAHDNVKRHECPVCHKFLSRHDNLKRHLLKQHAIQIPQLKNGRPRQTRRLAEESLLDPAINVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -