Cbil002143.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292451.1:9924451-9936524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 1.8 9.8 1.0 1 23 189 212 189 212 0.93 2 12 1.2 84 4.6 0.4 5 23 221 239 220 239 0.93 3 12 0.02 1.3 10.2 3.3 1 19 273 291 273 296 0.95 4 12 0.58 40 5.6 1.6 5 23 305 323 303 323 0.94 5 12 0.00055 0.038 15.1 0.3 3 23 331 351 329 351 0.96 6 12 2.4e-05 0.0017 19.4 2.4 1 23 359 381 359 381 0.97 7 12 0.0038 0.26 12.5 2.3 1 23 390 413 390 413 0.96 8 12 0.00028 0.019 16.0 0.2 1 23 419 441 419 441 0.97 9 12 3.1e-07 2.1e-05 25.4 2.4 1 23 447 469 447 469 0.98 10 12 0.0014 0.095 13.8 1.0 1 23 474 496 474 496 0.98 11 12 6.1e-06 0.00042 21.3 4.1 1 23 502 524 502 524 0.97 12 12 0.001 0.068 14.3 2.1 2 23 531 553 530 553 0.95
Sequence Information
- Coding Sequence
- ATGGCCATGGAGAATTTGTGTAGACTATGTGCTAAAGAAGATGTATTCTCAAAGAATCTACTAGATGAAAACAATAGAGGCGTTCGGAAAATGATACAAGACTTTTTACAAATCATAGTATACGAAAATGATGATTTAACTACAAGAATATGCTTGAACTGTGAAGAGAAGATGGTCACCTTTCAACTATTTGTACTAGAATGCTACAAAGTTCAGGAAACCTTGCAAAAACTGTTCAGTGAGCAAAATGAAGACTTGCTAATAAAACATGAAGATAGTGCAATTATGCCTGTAATCAAATCTGagGTAAAAGATGAAATGACAGCTGAAGATATTGCCAatgtACTGAACAATGAAACATTTTTCGGcgctgatgataatgattatcAAGATGACCATGATCAAGAGGATGAGGATGAGGATGACCTAGATGATATTACTATTGCTactttaaaacaaattaaatctaCCCAAATTAAAGAACTAGCTGAGACCAATGTTGATATTGAAGCGCTCAACCGAATCCTAAAATCACCCAGCTTTAAAGTGAAAGATATTGTCAAATTTGAATGCATAGTTTGTAAAGAAAAGTTAAAGACATGGTTTAATTTACAAGCACACTACACCAAACGGCACAAAACTGAACCTGTGGTGTTATGTATGTGTGGTTTTCAAATCCGATCAAAAAGTGCCCTTTATAAACATGTTTCCGAGCATAAATTTCAaagttctaaattaaaaaagaaagatGCAAGTGATGAAGATAAGCAAGAAGATATTAAATATTCTAATTTGAATGTGAAAGATTTTGTCAAGTTTACTTGTAATGAATGCGAAATAGAATGCACCAGTTGGTACAGTTTAAAGGCGCATTGTGAAGAGAAACATGATTCTTCACCTATGGTCCAATGCAAATGTGGCATCACCCTCAAATCCAAATCCGTTTTGTATAAACATATCCATGATCACAAAAACCCTAATATTCTAGCGTGTGATAAATGTCCAAAAGTTTCCAAATCTCTAGCAgcattaaataaacataaaatgaggCATATTCCGAAATCAGAAAGAAAGTTCTGTTGCTCTGGGTGTGAAAAGATATTCAATACAAAAGATGCCTTGAAATCTCACGAAAGATCACATATTCCaatagaaaatagaaaaatatatcaCTGTGATGTTTGTAATTTGAAattcacAACGCGATCGTCCGCTTCCTCGCATAAGAAAGTGGTCCATGAAAAGGTAAAAGGCTACGTTTGTGATCTGTGTGGGTACGCGTGCGGTACCAATGGAGAGTTACGGCAACACCGCGCTATACATAGCGACGACAAACCCTTCGTCTGCAATAAATGTTCTAAACCTTTCAAAACCTACTCGAATCTGAAGACTCACATGGACACTCACGAAGACACAGCGTACGAGTGCTACATCTGTCGACGTATTCTGAACAGCCGACGCACGCTTCGCAAACATCTACTAGTTCACGAGGACAAATGCCGGCACATCTGCTCTTACTGCAACAAGGCATTCAAGAGGAGACAGACTTTGAAGGTTCACATGTACACGCACACAGGAGATAAGCCGCTCACTTGCAAGTGGTGTGAAGAGAGGTTTGCTTACGCGTCGACATTGCGCTCACACAGGCTGCGGTGCCATCCCGACAAGATGGTCGGCCAACATGACTACAACTCGTCCTATGTAGTCATGAACCAtaATTACATCAAAAACGACGTGTCAACAGTAAGTGCTCCGGCAACTAAAAACGAAGTGGCGGCTTTATAG
- Protein Sequence
- MAMENLCRLCAKEDVFSKNLLDENNRGVRKMIQDFLQIIVYENDDLTTRICLNCEEKMVTFQLFVLECYKVQETLQKLFSEQNEDLLIKHEDSAIMPVIKSEVKDEMTAEDIANVLNNETFFGADDNDYQDDHDQEDEDEDDLDDITIATLKQIKSTQIKELAETNVDIEALNRILKSPSFKVKDIVKFECIVCKEKLKTWFNLQAHYTKRHKTEPVVLCMCGFQIRSKSALYKHVSEHKFQSSKLKKKDASDEDKQEDIKYSNLNVKDFVKFTCNECEIECTSWYSLKAHCEEKHDSSPMVQCKCGITLKSKSVLYKHIHDHKNPNILACDKCPKVSKSLAALNKHKMRHIPKSERKFCCSGCEKIFNTKDALKSHERSHIPIENRKIYHCDVCNLKFTTRSSASSHKKVVHEKVKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCSKPFKTYSNLKTHMDTHEDTAYECYICRRILNSRRTLRKHLLVHEDKCRHICSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHPDKMVGQHDYNSSYVVMNHNYIKNDVSTVSAPATKNEVAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119862;
- 90% Identity
- iTF_01529461;
- 80% Identity
- -