Cbil001191.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:15833240-15847532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00051 0.035 15.2 0.2 2 23 146 167 145 167 0.93 2 11 0.00075 0.051 14.7 2.4 1 23 173 195 173 195 0.96 3 11 7.5e-05 0.0051 17.8 0.2 1 23 297 319 297 319 0.98 4 11 3.2 2.2e+02 3.3 0.2 2 23 326 348 325 348 0.88 5 11 0.00026 0.018 16.1 0.0 3 23 400 421 398 421 0.90 6 11 0.062 4.3 8.7 0.6 1 23 436 458 436 459 0.93 7 11 1.2e-05 0.00083 20.3 0.2 1 23 486 508 486 508 0.98 8 11 0.0008 0.054 14.6 0.2 1 23 514 536 514 536 0.97 9 11 0.00045 0.031 15.4 0.3 1 23 542 564 542 565 0.95 10 11 0.32 22 6.4 0.5 1 23 580 602 580 602 0.97 11 11 0.0079 0.54 11.5 0.1 1 20 749 768 749 771 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAGACAGAGAGTTCAACCTCCATTGGGGGGGAGGGGAAGTAGTAATAAAGCATGATCCAGAAAATCAACCTATATGCAATGTTGAAAGTGTGCATGGAGATTATCAAAACATGACTCCAGAGGAAATAATGGCGAACACAGATCAAATGGCAGCAGAGAACCTCATGTTCTTAGCACAGGATGTGATTGGTTACACGGAGACGGCTGAACTGGCTGATGACCCAAGTGTTGAGTGTGTGACGGAGGAAGTTATCACTGATGATTGGGTTGTTGATGGTGAACAGGACAGGATGGAAGTGCCAATGGAACATTTGACAAACACAATGGAACTTCATGTAAAGGAAGAAAATGATGTTGATGTTCCTATACCAATAGACCAAGAAATAAACCTACATTCACAAGATGAGTACACGGCAATGCGACCATGGCCTTGCGACTTCTGCTCGCGTCGGTTCCGCAAGAAAGCGGCGCTAATGAACCACATGGTCGCGCATCAGAACGACCGGCCTCACGCCTGCAACCTGTGCGGAGTGCGATATGTGCGCAAGTGCGACCTTATGAACCATTTGAAGGTTCACGCTTTCGTGCCGGATAATGCTGATTCAGTGGACTTTGAAGAGCTGCTAGAGAATAGCCAAATCGCAAAACCAAAGAAGAAGCGAGGCAGGCGGAAAAAGATACCCGAGCCAGAAGAGGATGAGTGGGAGAACATGACGTCAGCACGGACACAGCAATGGTCCCGACGGGGCCGGTCGCCGGCCAAGCCGCCTccgtcgccgccgccgccgatgTCTCCTCCGTCGCCGCCGTCGCCGTCGACGCCGCCGTCGCCGCCATCGCCgccgtcgccgccgccgccgccagccGACCCTTCGCGCCCGTTCGTCTGCAAAACTTGCGGCATCGGCTTCGCGAGGGAGAAGGCGCTACAGTCGCATTCTAGGGTCCACGGAGGTGATTCCCCAATGGAATGCAGTGAGTGCGGCGAGCTGTGCTGGTCGCGCGACGCGCTCGCGACGCATGTCGAACAGAAACACCCGCATCTGCCGCCGCGTACTGCGCAGGACACCAACTACAATGAGTCAGACTCAGGTGATGACATGGAGTTCCGTCTGTCTCCGGAGTCTGCGCCGAGCGGCGGCGCGCCCGAGCGGCCGGTGTACGACACGACGCGAGGGCCCGAGCTGTTCTGCCCGGACTGTGGCGTCGCCTTCCAACGCGCGGACCTGCTGAGGCGGCATGTCGCGGCCGCGCATAGCTACAAGCGGGTGGTTCGCGTGAGCGGGTCGGGCTGGGAGCACACGTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTGCTCGCGCACGCCGAGCTGCACCACCGCCGCCGGCCGCCCGCCAGGTTAAAAAAATCGTCCAAAGGACGTAATAGCACGTCGATATCCAGTAATTCGCGGCAATTCCCTTGTAGGGAGTGTGGTAAAGTGTTCGGTTCGCGCAGTTCCCAACAGATCCATATTCGGATCCACACGGGCGAGCGGCCTTACGCGTGTCGGTTCTGTTGGAAGGCGTTCGCTGATGGCGGCACGCTAAGGAAACACGAGAGAATACACACGGGTGAGAAGCCATACGCATGCGCGGTTTGTCCCCGCGCGTTCAACCAACGCGTAGTGTTGCGGGAGCATGTCAGATCACATCACTCTGCGCCGGACCGCAGACTGCAGGCTAACGGTGGTGCGGCGTATTCGTGTGTTGTTTGCTCGCGATCGATGCACACGAGTGTGGAATTGGTGCAACATTTAATTCAGCACTGCGATGCGAATACGGCGTTGAAGAGACAACCACAGAACGGCCCTAGAAAATACAAGCGGCGGCGGAAGATAAAGAGCGAAGTGTCACCCGTGCGGCGCGAGTGGGCGACCCCCTCCCCGCAGCCGTCGCGCTCCCCCTCGCCCCGCCCCGCgggctccccctccccctccccctccccgccgCCCCCGCCGGCCCCGCCCCCGCCggccccctcccctcccccgcgCCGCCGCTCCCGCCGCGAGCCCCCGCCGAGACCCCGCATGATACACACCTCGGAGGAGACCAAAGCTAAGAAGGTTAAGACTGTACGTCAACGTCGTCCACCTCGTCACCCGGCCGACGACCTGCGAGCCATCGGTCCCCATTCACCATCACCGAAACGCGAACCCGTCTCCTCCCCAAGGCCCGAAGAAACCCCAGACGAAGGCGGCCCTTATAAATGCGAAATGTGCTCGCTAGAGTTCCCTCGGAGAGACGCTCTGTTACTTCACGTGCCGGTACATATATGA
- Protein Sequence
- MDGDREFNLHWGGGEVVIKHDPENQPICNVESVHGDYQNMTPEEIMANTDQMAAENLMFLAQDVIGYTETAELADDPSVECVTEEVITDDWVVDGEQDRMEVPMEHLTNTMELHVKEENDVDVPIPIDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNADSVDFEELLENSQIAKPKKKRGRRKKIPEPEEDEWENMTSARTQQWSRRGRSPAKPPPSPPPPMSPPSPPSPSTPPSPPSPPSPPPPPADPSRPFVCKTCGIGFAREKALQSHSRVHGGDSPMECSECGELCWSRDALATHVEQKHPHLPPRTAQDTNYNESDSGDDMEFRLSPESAPSGGAPERPVYDTTRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRVVRVSGSGWEHTCDACGEACSDALQLLAHAELHHRRRPPARLKKSSKGRNSTSISSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRLQANGGAAYSCVVCSRSMHTSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKIKSEVSPVRREWATPSPQPSRSPSPRPAGSPSPSPSPPPPPAPPPPAPSPPPRRRSRREPPPRPRMIHTSEETKAKKVKTVRQRRPPRHPADDLRAIGPHSPSPKREPVSSPRPEETPDEGGPYKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377360;
- 90% Identity
- iTF_00662470;
- 80% Identity
- -