Cbil025345.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:6143208-6152339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.15 13.3 0.8 1 23 77 100 77 100 0.94 2 17 1.3 88 4.5 0.3 2 23 127 149 126 149 0.95 3 17 7.2 4.9e+02 2.2 3.7 1 23 171 193 171 193 0.94 4 17 0.00045 0.03 15.4 0.5 2 23 198 220 197 220 0.95 5 17 2.5 1.7e+02 3.6 0.5 3 23 244 265 242 265 0.93 6 17 2e-05 0.0014 19.6 1.1 1 23 270 293 270 293 0.97 7 17 0.03 2.1 9.6 5.2 1 23 299 321 299 321 0.95 8 17 0.00027 0.018 16.1 0.3 1 23 327 349 327 349 0.97 9 17 3.4e-05 0.0023 18.9 0.4 1 23 355 378 355 378 0.97 10 17 0.026 1.8 9.8 0.3 1 23 636 659 636 659 0.94 11 17 0.47 32 5.9 0.3 2 23 686 708 685 708 0.96 12 17 0.00045 0.03 15.4 0.5 2 23 757 779 756 779 0.95 13 17 0.19 13 7.1 1.0 3 23 803 824 801 824 0.94 14 17 5.8e-05 0.004 18.2 1.5 1 23 829 852 829 852 0.97 15 17 0.0052 0.36 12.0 2.1 1 23 858 880 858 880 0.94 16 17 0.00095 0.065 14.4 0.2 1 23 886 908 886 908 0.95 17 17 0.00012 0.0085 17.2 0.4 1 23 914 937 914 937 0.97
Sequence Information
- Coding Sequence
- atgaatttCATTTTAGGTAATCCTGAACCAGAAAATGTAACCGCACCGAAGCCTGTCGAACCAGAAAATGTAACAGCAACGAAGTCTGTCAAACCAGAAAACGTAACAGAAGCGAAGTCTGTCGATGTGATAAGCAAGCTGACCCCGCGCCAAAGTAAAATCCGAAGTGTCAAATTGATCCTTCTGTGTTCGAATGCCAGCCCGCTCTGGTTGCATTCCAACACTGGCTATAAATGTGCCTACTGCGAGAATCGGTATCCACAACCTGATCATCTCAAACTACACACTCTGGAAGAGCATGATGATGTTACAGAAGCATTATTCCTACGGACGCCGTTTTTCAAAGACGTCCTCGTCACCCTAGACATAACTGCTTTAACCTGCAAGCTTTGCTCAAAAAATATCGACAATATCAACGTTCTGATGGAGCATCTAAACACCACTCACAAAAAACGAATGGACGTTAGCGTTTCCAATCTCTTTCTTCCATTCAAATTCGACTCTAACATATTCCATTGCGGATTATGTACGGAGAAGTTTACCGAATTCAAATTTTTTGACAAACATGCCAAAGGGCATGTTAAAACTGTTATGTGTGATATCTGCAATTTGGCGTTCTCTGATAAACATTTACTGGCCAACCACAACAACACTATGCATAAACTAAACCATCCGACAACACTTCCAAAACCTGTAGAGAAAACTAGCAAGAAAGATAAATCGAGTATATGTCGTGAGTGCGGCGATCGCTTCCCAACAGGTTACCTCAAAACAAGGCATTTTAGACAAGTTCACGGTTCACAAGAATTTACATGCAACGCTTGCGACCGTTCATTCACAAGCCAAGACAGTTTGAGTATCCACAGGAAGCGAGATCACTTGATGGAGCGCCCTCACGCATGCAGTGTCTGTCAAAAAACATTCTTCGCCAAGAAGACACTACAGCATCATGAGACGACACATTCGAACGTCATGAATTACTCGTGTGAAGAGTGCGGGAAGAAATTCAAACTGAAGAGGTCTCTGGTACCGCATATGGCGATTCATAGAGGACATTGCAGGTTCGCATGTGATTTGTGCGGACAGAAATTCGTACAGAAGGGCTCTTGGAAGGGTCACATGCGCACGAAACACCAAGACACGTGTCGGCGCGTGCGCAGGGCCTTACTCGTGGTGTACTCTCAGATAAGACCAGCTTTTCGATCATTCACCCACGAGCGGACGGAAGCCCAGGAGAGTGCCTTCCCGGCGAAGACGCGGCGACCTTTCTCGGTCTTGGGAGTTTTTACCAAAAGCTTCCAAGAATCTGACACGTGTCGGCGCGTGCGCAGGGCCTTACTCGTGGTGTACTCTCAGATAAGACCAGCTTTTCGATCATTCACCCACGAGCGGACGGAAGCCCAGGAGAGTGCCTTCCCGGCGAAGACGCGGCGACCGAGTCCAGCTGAGGATTCAGCTCTTGTCTCGGTGGACAAAAACCCCGTTCGGGCCGAGGCCTCGCAGACGGGATCTCACCTGGAGCGGTGCTGTCTTCGCAGTGAGCTGGCCCCCTTCCTTCGAGACCGGCCGCTGCGATCCCCTCCACGGTACCCTCAGTCTCCGAGCGTTCTCTCTCGGCTGAGTTCCATTACTTCTGTGTTGTCAACCTCTAACCCTCAAAACAGTCTACACACCTTTGATGCTGCCTTCTGCAGTAATCCTGAACCAGAAAATGTAACAGCAACGAAGTCTGTCAAACCCGAAAATGTATCAGCAACGAAGTCTGTCAAACCAGAAAACATAACAGAAGCGAAGTCTGTCGATGTAATTAGCAAGCTGACCCCGCGCCAAAGTAAAATCCGAAGTGTCAAACTGATCCTTCTGTGTTCGAATGCCACCCCGCTCTGGTTGCTTTCCAACACTGGCTATAAATGTGCCTACTGCGAGAATCGGTATCCACAACCAGATCGTCTCAAACTACACACTCTGGAAGAGCATGATGATGTTACAGAAGCAGTATTCCTACGGACACCGTTTTTCAAAGACGTCCTCGTCACCCTAGACATAACTGCTTTAACCTGCAAGCTTTGCTCAAAAAATGTCGACAATATCAACGTTCTGATGGAGCATCTAAACACTACTCACAAAAAACGAATGGACGTTAGCGTTTCCAATCTCTTTCTTCCATTCAAATTCGACTCTAACATATTCCACTGCGGATTATGTACGGAGAAGTTTACCGCATTCAAATTTTTTGACAAACATGCCAAAGGGCATGTTAAAACTGTTATGTGTGATATCTGCAATTTGGCGTTCTCTGATAAACATTTACTGGCCAACCACAACAACACTATGCACAAACTAAACCATCCGACAACACTTCCAAAACCTGTAGAGAAAACTAGCAAGAAAGATAAATCGAGTATATGTCGTGAGTGCGGCGATCGCTTCGCGACACGTTACCTCAAAACAAGGCATTTTAGACAGGTTCACGGTTCACAAGAATTTACATGCAACGCTTGCGACCGTTCATTCACAAGCCAAAACAGTTTGAGTATCCACAGGAAGCGAGATCACTTGATGGAGCGCCCTCACGCATGCAGTGTCTGTCAAAAAGCATTCTTTAGCAAGGCATTTCTACGGAATCATGAGACGTCGCATTCGAACGTCATGAATTACTCGTGTGAAGAGTGCGGGAAGAAATTCAAACTGAAGACTTCTTTGGGACCGCATATGGCGATTCATAGAGGACATTGCAGGTTCGCATGTGATTTGTGCCCACAGAAATTCGTACAGAAAGGCTCTTGGAAGGGTCACATGCGCACGAAACACAAAGTTATCGTATGA
- Protein Sequence
- MNFILGNPEPENVTAPKPVEPENVTATKSVKPENVTEAKSVDVISKLTPRQSKIRSVKLILLCSNASPLWLHSNTGYKCAYCENRYPQPDHLKLHTLEEHDDVTEALFLRTPFFKDVLVTLDITALTCKLCSKNIDNINVLMEHLNTTHKKRMDVSVSNLFLPFKFDSNIFHCGLCTEKFTEFKFFDKHAKGHVKTVMCDICNLAFSDKHLLANHNNTMHKLNHPTTLPKPVEKTSKKDKSSICRECGDRFPTGYLKTRHFRQVHGSQEFTCNACDRSFTSQDSLSIHRKRDHLMERPHACSVCQKTFFAKKTLQHHETTHSNVMNYSCEECGKKFKLKRSLVPHMAIHRGHCRFACDLCGQKFVQKGSWKGHMRTKHQDTCRRVRRALLVVYSQIRPAFRSFTHERTEAQESAFPAKTRRPFSVLGVFTKSFQESDTCRRVRRALLVVYSQIRPAFRSFTHERTEAQESAFPAKTRRPSPAEDSALVSVDKNPVRAEASQTGSHLERCCLRSELAPFLRDRPLRSPPRYPQSPSVLSRLSSITSVLSTSNPQNSLHTFDAAFCSNPEPENVTATKSVKPENVSATKSVKPENITEAKSVDVISKLTPRQSKIRSVKLILLCSNATPLWLLSNTGYKCAYCENRYPQPDRLKLHTLEEHDDVTEAVFLRTPFFKDVLVTLDITALTCKLCSKNVDNINVLMEHLNTTHKKRMDVSVSNLFLPFKFDSNIFHCGLCTEKFTAFKFFDKHAKGHVKTVMCDICNLAFSDKHLLANHNNTMHKLNHPTTLPKPVEKTSKKDKSSICRECGDRFATRYLKTRHFRQVHGSQEFTCNACDRSFTSQNSLSIHRKRDHLMERPHACSVCQKAFFSKAFLRNHETSHSNVMNYSCEECGKKFKLKTSLGPHMAIHRGHCRFACDLCPQKFVQKGSWKGHMRTKHKVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -