Cbil025350.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:6172618-6176858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.08 5.5 8.3 2.3 1 23 40 63 40 63 0.93 2 21 0.11 7.2 7.9 0.0 2 23 90 112 89 112 0.94 3 21 0.86 59 5.1 2.2 2 23 135 156 134 156 0.97 4 21 0.54 37 5.7 6.0 1 23 160 183 160 183 0.92 5 21 0.018 1.2 10.4 1.5 1 23 278 301 278 301 0.94 6 21 0.032 2.2 9.6 0.1 2 23 328 350 327 350 0.95 7 21 0.49 34 5.8 0.9 2 23 373 394 372 394 0.97 8 21 0.0015 0.1 13.7 0.4 1 20 398 417 398 420 0.91 9 21 0.0088 0.6 11.3 5.7 1 23 425 448 425 448 0.96 10 21 0.02 1.4 10.2 3.6 1 23 454 477 454 477 0.95 11 21 6.7e-05 0.0046 18.0 0.9 2 23 485 507 484 507 0.96 12 21 0.00021 0.014 16.5 0.4 1 23 513 535 513 535 0.97 13 21 0.0025 0.17 13.1 0.1 1 23 672 695 672 695 0.93 14 21 0.46 31 5.9 0.2 2 23 722 744 721 744 0.94 15 21 0.0079 0.54 11.5 1.8 1 22 766 787 766 787 0.96 16 21 0.0067 0.46 11.7 0.1 1 23 792 814 792 814 0.94 17 21 0.0052 0.36 12.0 1.4 1 23 819 842 819 842 0.95 18 21 0.52 36 5.8 4.7 1 23 849 872 849 872 0.95 19 21 0.0015 0.1 13.7 4.6 2 23 880 902 879 902 0.96 20 21 0.0024 0.17 13.1 0.5 2 23 908 929 907 929 0.95 21 21 1.5e-05 0.001 20.1 3.9 1 23 935 957 935 957 0.99
Sequence Information
- Coding Sequence
- atggcTCCCCCGTCAGTCTTACCTAGTTGCGAGCTAAATAAGCATCGACACAACATTAAGACGATATTGCAATGTTCTAACGCCACTCCGATTCGATGTCACTTCTTCGGCAGTGGCTTCTTTTGCAGTTTCTGCAAATCTAGCTTCATCAAAGCGGCCGATCTCAAAACCCACACCATACACGAACATGGTGAAGAAGCGATAAAAAAGTTCATGCACGGTTTTAGGTTGGTTAAGTTTGTTGTCAAACTAGATATCACTTCTCTTATGTGCAACATTTGTAGCATGTCGATCAATACGCTTGAGTCGCTCATCGAACATCTTGACAGTATTCATCAGAAAGGGCTTCATACAGATATCAAAAATCGTATCGCCTGCTTCAAATTCGATGGAGAGGCGATGAAATGCTACGTTTGTTCGGCGGAGTATCAAAGCTTCAAATGTTTATTCGCACACATGAACAACCATATCGCAAACTTTATTTGCGATGAATGCGGTGCTGGTTTTATAACTAAACATCAGATCTACCACCACCACTGCTTTGAGCATAAAGCACCTGCAGTTGAGAGCTCATCGGCTAttcaaagaataaaaattaagccCTCGACGGAACGcccactatttaaaaaaataaaagtaaaaactacAGAACGACCAATGCGCAGTACAAAACAGACTGAACTGTCACAAGATTGTGAATTGGTCACAAAAATCACTCCACAGTCACTCTTACCTCAGGGTTTTGAGCTAGATAAGCATCGATACAACATTGGGACAATATTGCAATGTTCCAACGCCACTCCAATACGAAGTCACTACGTCGGCAGTGGCTTCGTTTGCAGTTTCTGCAAATCTAGCTTCATCAAAGCGGCCGATCTCAAAACGCACACTATACACGAGCATGGTGAAGAAACGAGGAACAAGTTGTTACACGATATGCATTTGTATACGTTTGTCATCAAACTAGATATCACTTCACTTATGTGCAACATTTGTAGCATGTCAATCAATACTCTTGAGTCGCTAATCGAACATCTTAACAGTATACATCAGAAAGGGCTTCATACCGATGTCAAAAATCATATCGCCTGCTTCAAATTCGATGGAGAGGCAATGAAATGCTACGTTTGTTCAGCTGAGTATCAAAGCTTCAAATTTTTGTATGCACATATGAACAAACATATTACAAACTACATTTGCAATGAATGCGGCGctggttttataaataaaaaacaactcCACACCCACTCCGGTGCGCATAAAGTAGGCGAACACAAATGTGATTTATGTGACAAAGTATTTAACTCATCTTTAAAAATGAGATCTCACAGACGACATTCGCACACTGTTAGAGCAGTATACACATGCCACCAGTGTCCGGAAAGATTTACTACTCTCACCGCCAAACATAAACACGTAGAGAAAGCTCATGGAATTGTTTTAGCGAGCCTAAAATGCGACGCTTGCGACCGCACCTTTAAAACCAACGACGGTCTTCGAATTCATAGGAAAAAAGACCATTTGATGGAAAGAAATCACGTATGTCAGATTTGTGATCGTGGATTTTACGATGCAGCCGTGTTGAGGAAACACCAAGTGACTCACACAGGGGCTCGTGACTTTAAATgtATCGAGATCGAAATCAGTGCCAACCGAATCATTAAAACGGAAACAGACGATTGTTTCAAAGTTCAAGACACAATTAAAAGTGAGCTGATTGAGTCTAAACCACACAACAGCAATGTCAAAACCAAACGTGTATCTCAGacgaaaataatacaaaaagataAAACCAAAGTTACTTCAGATAACGAATATTCGGAGTTGGAGAAGAAAACGAAACATAAAACAGTCAAAGAACCACTTACTCAAAAGAATCAAACGAAATCTACATCAGAGAATTTGGAACTGATTGCTATAAAGATGGAATTAGAAAAGCATAGATATAACATTCGGACAATACTGCAATGTTCCAACGCGACTCCTATCCGCTCACATTACCTCGGAAGCGGGTATGTCTGCAGCTTCTGCAATGCCTCTTTCATCAAAGCCGCTGAACTCAAAAACCACAATATTGTAGACcatgacaataaaataaaaaacaagttcAATCCGAGGGGAGGTCTCATAAATTTACTGGTGAAACTAGATATTACATCACTATGCTGCAACATTTGCAATTTTGCCCCCACCACCCTGGACCAGCTAGTCGAACACCTCAACATCGTTCATGCAAAAAATCTCCACACGGACATCAAAAATCATATCGTCAGCTTCAAATTAGACAATGAAGTGTTCAAATGCCATATTTGCTCGGCAGATTTCAACAGTTTCCGGTACTTACTGTCGCATATGAACAAATACTTCTCGAACTTTATATGCGATGTCTGCGGCTCAGGGTTCGTGAACCGATACCAACTTTTAATGCATTCAGACTCTCACCAAAAAGGCTCATTCAAATGCAACTCTTGCGAAAAAGTATTTTCGTCAGCAGCTAAACGCAGAACTCACGAACTTCGAACACATATATCTGCATCAGCGAAGTACAGATGCTTTCATTGCGGAGATCACTTCAAAAATAGGACTGTGAAACAGAAACATATGATAGAAATTCACGGCGCGAAGTACCCGGACTTGAAATGCAACGCCTGTGATAAAACCTTTAAGAACACCAAGTGTCTACAGATACACAAGAGGAAAGACCATTCGTCAAAACGATGGACATGCAAGTTGTGTGACAAGGAGTTTTACAGAGCGGACCGAATGAAACAACACGAGTTGATACATTCTGGTGTTCGGAACTTCACTTGCGAAGTGTGCTCTAAATCTTTTGGCCGCAAATGCTCTCTCAAAGAGCATTTGCGTACTCACTCGAACGATCGCCAGCGAAAGTAA
- Protein Sequence
- MAPPSVLPSCELNKHRHNIKTILQCSNATPIRCHFFGSGFFCSFCKSSFIKAADLKTHTIHEHGEEAIKKFMHGFRLVKFVVKLDITSLMCNICSMSINTLESLIEHLDSIHQKGLHTDIKNRIACFKFDGEAMKCYVCSAEYQSFKCLFAHMNNHIANFICDECGAGFITKHQIYHHHCFEHKAPAVESSSAIQRIKIKPSTERPLFKKIKVKTTERPMRSTKQTELSQDCELVTKITPQSLLPQGFELDKHRYNIGTILQCSNATPIRSHYVGSGFVCSFCKSSFIKAADLKTHTIHEHGEETRNKLLHDMHLYTFVIKLDITSLMCNICSMSINTLESLIEHLNSIHQKGLHTDVKNHIACFKFDGEAMKCYVCSAEYQSFKFLYAHMNKHITNYICNECGAGFINKKQLHTHSGAHKVGEHKCDLCDKVFNSSLKMRSHRRHSHTVRAVYTCHQCPERFTTLTAKHKHVEKAHGIVLASLKCDACDRTFKTNDGLRIHRKKDHLMERNHVCQICDRGFYDAAVLRKHQVTHTGARDFKCIEIEISANRIIKTETDDCFKVQDTIKSELIESKPHNSNVKTKRVSQTKIIQKDKTKVTSDNEYSELEKKTKHKTVKEPLTQKNQTKSTSENLELIAIKMELEKHRYNIRTILQCSNATPIRSHYLGSGYVCSFCNASFIKAAELKNHNIVDHDNKIKNKFNPRGGLINLLVKLDITSLCCNICNFAPTTLDQLVEHLNIVHAKNLHTDIKNHIVSFKLDNEVFKCHICSADFNSFRYLLSHMNKYFSNFICDVCGSGFVNRYQLLMHSDSHQKGSFKCNSCEKVFSSAAKRRTHELRTHISASAKYRCFHCGDHFKNRTVKQKHMIEIHGAKYPDLKCNACDKTFKNTKCLQIHKRKDHSSKRWTCKLCDKEFYRADRMKQHELIHSGVRNFTCEVCSKSFGRKCSLKEHLRTHSNDRQRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -