Cbil025353.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:6211971-6215998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.017 1.1 10.5 1.5 1 23 155 178 155 178 0.94 2 19 0.04 2.8 9.2 0.1 2 23 205 227 204 227 0.95 3 19 8.2 5.6e+02 2.0 0.5 2 23 250 271 249 271 0.91 4 19 5.4e-05 0.0037 18.3 0.1 1 23 275 297 275 297 0.95 5 19 4.6e-05 0.0031 18.5 3.5 1 23 302 325 302 325 0.96 6 19 0.0026 0.18 13.0 2.0 1 23 331 354 331 354 0.97 7 19 0.00013 0.0089 17.1 2.9 2 23 362 384 361 384 0.96 8 19 0.06 4.1 8.7 7.4 1 23 390 412 390 412 0.97 9 19 0.12 7.8 7.8 0.7 1 14 418 431 418 433 0.92 10 19 0.033 2.3 9.5 2.3 1 23 576 599 576 599 0.93 11 19 0.029 2 9.7 0.1 2 23 626 648 625 648 0.95 12 19 0.27 18 6.7 1.1 2 23 671 692 670 692 0.97 13 19 5.9e-05 0.004 18.2 0.1 1 23 696 718 696 718 0.95 14 19 0.0015 0.1 13.8 4.0 1 23 723 746 723 746 0.96 15 19 0.07 4.8 8.5 3.2 1 23 752 775 752 775 0.95 16 19 0.00018 0.012 16.7 2.8 1 23 782 805 782 805 0.97 17 19 0.00088 0.06 14.5 1.3 1 23 811 833 811 833 0.97 18 19 4.9e-06 0.00033 21.6 1.9 1 23 839 861 839 861 0.99 19 19 0.0034 0.23 12.6 3.3 1 23 867 890 867 890 0.98
Sequence Information
- Coding Sequence
- ATGGTGATAATATTCATTGTTTTCTTTGTAGGTAACATCTTCAACTACCAACCCGTAAAAACGGAACTAGATGACGCGGAGGCATCGCTGGTAAAGCTCGAAGCAAATGATGCTCCTACACAAGCAAAGCGACGAAGACAGATCAAAGCTAAACAGTACCTTGAGCCggtcaaaacaataaaaaaaattaaccttAGACCTGTAGCTAAATGCATATCGGTTAATAGAGGAATAAAAATCAAACCCCCCACGGAACCTCCACCAGTTcaaaaaataatagtaaaatcTAAAGAACGACCAACTCGCAGGAAACAAGAATGTGAATTGGtcataaaaagaataaaaatagctccCCCGTCAATCTTACCTAGTTGCGAGCTAGATAAGCATCGATACAACATCAGGACGATATTGCAATGTTCCAACGCCACTCCGATACGATGTCACTACGTCGGCAGTGGCTTCGTTTGCAGTTTCTGCAAATCTAGCTTCATCAAAGCGGCCGATCTCAAAACGCACACCATACACGATCATGATGAAGAAACGAAAAACAAGTTTATGCACGGCTCTTACTTGTCTTCGTATGCCGTCAAACTAGATATCACTTCACTTATGTGCAACATTTGTGGCATGTCGATGTATACTTTTGAGTCGCTCATCGAACATCTTAACAGTATACATCAGAAGGGGCTTTATACCGATGTCAAAAATCATGTCGCCTGTTTCAAATTCGATGGAGAGGCGATGAAATGCTACGTTTGTTCGGCGGAGTATCAAAGCTTCAAAATTTTGTACGCACACATGAACAAACATATCACAAACTTTATTTGCGATGAATGCGGCGctggttttataaataaaagccaACTGAAAAACCATTCCGGTACACATAAAGTAGGTGCACACAAATGTGATATATGCGACAAAGTGTTCAACACGTCGATGAATATGAGGTCTCATAAACGGCAAACGCACACTGATATTGCTTTATACGTGTGCCAGCAATGCCCGGAaagatttaaaactaaaaacgcCAAACATAAACACATAGAGAAAGCTCACGGAATTGTTTTATCGAGCTTAAAATGCGACACTTGTGACCGTACCTTCAAAAGCTACGGAAGTCTTCATGCTCATAGAAAGAGAGACCATTTGATGGAAAGAAATCACGTATGCAAGATTTGTGATCATAGATTTTTCAAATTGTGCGACTTAAAGTCACACCAAGTGACTCATACAGGGACTCGTGACTTTAAATGTGATCTTTGCTCTAAGACATATTCAAGACGAGATGgtAACATCTTCAACTACCAACTCATAAAAACGGAACTCGATGACTCGAAGACATCGCTGGTAAAGCTCGAAGCAAATGATGAACCTACACAGACAAAGCCACGACGACAGATCAAAGCTAAACAGTCCCTTGAGCCCGTCAAAACAATTAGAAAAATTAACCTTAGACCTGCAGCTAAATGTACATCGGttaatagagaaataaaagtagAACCCCCCACGGAAACTCCaccagttaaaaaaataaaagtgaaaTCTACAGAACGACCAACTCGCAGGAAACAAGATTGTGATTTGGtcataaaaagaataaaaatagctccCCCGTCAATCTCACCTAGTTGCGAGCTAGATAAGCATCGATACAACATTAGAACGATATTGCAATGTTCCAACGCCACTCCGATACGATGTCACTACGTCGGCAATGGCTTCTATTGCAGTTTCTGCAAATCTAGCTTCATCAAAGCGGCGGATCTTAAAACGCACACCATACACGATCATGATGAAGAAACGAAAAACAAGTTCATGCACGGCATTAAGTTGTTTACGTTTGTCGTCAAACTAGATATAACTTCACTTATGTGCAACATTTGTAGCATGTCAATCAATACTCTTGAGTCGCTCATCGAACATCTTAACAGTATACATCAGAAGGGGCTTCATACCGATGTCAAAAATCATATCGCCTGTTTCAAATTCGATGGAGAGGCGATGAAATGCTACGTTTGTTCAGCGCAATATCAAAGTTTCAAATATTTGTACGTACACATGAACAAACATATCACAAACTTTATTTGCGATGAATGCGGCGctggttttataaataaaagtcaACTGCAAAACCACTCCGGGACACATAAAGTAGGTGCACACAAATGTGATTTATGCGACAAAGTGTTCAACTCTTCGATGAAAATGAAGTCTCATAAACGGCTAAGACACACTGGTATTGCTTTACACATGTGCCAGCAATGCCCGGAaagatttaaaactaaaaacgcCAAACATGAACACATAGAGAAAGCTCACGGAATTGTTTTAGAGAGTTTCAAATGCGACGCTTGTGACCGTACCTTCAAAACCCACGACGGTCttcgagttcataagaaaagagACCATTTGATGGAGAGAAATCACGTGTGCCAGATTTGTGATCGTAGATTTTTCAGTGCAGCTAGGTTAAGGCTACACCAAGTGACTCATACAGGGGCTCGTGACTTTAAATGTGAGGTTTGTTCAAAGACGTATTCAAGACGATATGTTTTGACGGAGCATATGCGCTCTCATACCAATGATCGTAGATTTAAATGTTCGTACTGTGGCATGGCTTTTCTGCAAAAATGCAGCTTGAAAGGACATTTGCGTAGTCGCCACGATTCAGAGTTAGAATAA
- Protein Sequence
- MVIIFIVFFVGNIFNYQPVKTELDDAEASLVKLEANDAPTQAKRRRQIKAKQYLEPVKTIKKINLRPVAKCISVNRGIKIKPPTEPPPVQKIIVKSKERPTRRKQECELVIKRIKIAPPSILPSCELDKHRYNIRTILQCSNATPIRCHYVGSGFVCSFCKSSFIKAADLKTHTIHDHDEETKNKFMHGSYLSSYAVKLDITSLMCNICGMSMYTFESLIEHLNSIHQKGLYTDVKNHVACFKFDGEAMKCYVCSAEYQSFKILYAHMNKHITNFICDECGAGFINKSQLKNHSGTHKVGAHKCDICDKVFNTSMNMRSHKRQTHTDIALYVCQQCPERFKTKNAKHKHIEKAHGIVLSSLKCDTCDRTFKSYGSLHAHRKRDHLMERNHVCKICDHRFFKLCDLKSHQVTHTGTRDFKCDLCSKTYSRRDGNIFNYQLIKTELDDSKTSLVKLEANDEPTQTKPRRQIKAKQSLEPVKTIRKINLRPAAKCTSVNREIKVEPPTETPPVKKIKVKSTERPTRRKQDCDLVIKRIKIAPPSISPSCELDKHRYNIRTILQCSNATPIRCHYVGNGFYCSFCKSSFIKAADLKTHTIHDHDEETKNKFMHGIKLFTFVVKLDITSLMCNICSMSINTLESLIEHLNSIHQKGLHTDVKNHIACFKFDGEAMKCYVCSAQYQSFKYLYVHMNKHITNFICDECGAGFINKSQLQNHSGTHKVGAHKCDLCDKVFNSSMKMKSHKRLRHTGIALHMCQQCPERFKTKNAKHEHIEKAHGIVLESFKCDACDRTFKTHDGLRVHKKRDHLMERNHVCQICDRRFFSAARLRLHQVTHTGARDFKCEVCSKTYSRRYVLTEHMRSHTNDRRFKCSYCGMAFLQKCSLKGHLRSRHDSELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -