Cbil000146.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:140159-142298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1e-05 0.0014 19.6 2.7 1 23 218 240 218 240 0.99 2 10 2.2e-06 0.00015 22.7 0.3 1 23 246 268 246 268 0.97 3 10 8.7e-05 0.006 17.6 4.9 1 23 278 300 278 300 0.98 4 10 1.6e-07 1.1e-05 26.2 0.5 1 23 305 327 305 327 0.98 5 10 0.0047 0.32 12.2 4.9 1 23 333 355 333 355 0.97 6 10 3e-05 0.0021 19.1 4.1 1 23 361 383 361 383 0.97 7 10 6.4e-08 4.4e-06 27.5 1.5 1 23 389 411 389 411 0.98 8 10 7e-06 0.00048 21.1 0.7 1 23 417 439 417 439 0.97 9 10 0.007 0.48 11.6 0.2 2 23 446 467 445 467 0.95 10 10 7.6e-06 0.00052 21.0 0.6 2 21 473 492 472 493 0.93
Sequence Information
- Coding Sequence
- ATGTCTGACTCCCTGTGCTGCGTGTGTTTGTGCGGCGATTTTAGATTGAAATGCATCGAGGATGAAGAACTTCTGAATATCTTCGAGCAGCTCACAAATTTTAAAgTCTGGGGTCCAATGTGTGCTGCTTGCGAGTGTCAGCTGAGGCATTGTGGGCAGTTCTCGAGGACGGCTCGTCGGTCGCAATCCCTCCTGACTGATATAGCTCATCGTGGCCTTAAGgTAACACGAGAAACGCTAGCCGAGTTGAAGGTACAACCGATTCGAGTCCTGTCGATAAGCAACCCTCGGTCCATGCATTCTGTTGATATACTCCACGATGACGAAACTAACATCAAATATGAAGTCTTAGTTAAAGTAGAAGAAGTATCAGAAGATGATAAGGATATAGAAAGTAATAAGGATGATGATATGAATAAAGATGATATAGAGGATATAGAAGATGATGAAGCTGTCAAACTGTCCATAGATAATGAACCTACCATTGCCAGCgtagaaaataaatcaaagaaAATCAGCAAATTAGTGAAGAATAATAAAGATGATGAAGCTGTCAAATCCATAGATATTGAACCTGTCAAAAAGATAGGAAATAAATCAAAGAAAATCAGCAAATTAGCGAATAAACGAACCAGAAAGAAACCAGAGATATACACATGCGAGTTCTGCAAGAAGATTTTCAAACGAAAGAATGAGATGGTTGTCCATCGTCGAACCCACACTGGTGAACGACCGTTCACTTGCGATGAGTGTCCCAAAGCATTTATTAGTGCTAGCAACTTGAAATATCATAAAATATCCCATGTTCCTATCGATGACCGACCTAGGGTGTACTCCTGTCAGCAATGTGGCAACACATTCTCTCACAAAATGCATCTAAGACTGCACTTACAAATCCATTCAGAGAAGAAGTACGCTTGCGATGTTTGTGGTAAATCCTTTTCTATGCCGACGCGATTGAAAAACCACATGCGGACGCATTCCGACGAAAGAACTCATTCTTGCGACCGTTGTGCAAAGTGTTTTAAGACTCTAAAAGTTTTAAGAGATCATATGCTGTCCCATACTGGGGTTAAACCTCATTCCTGCAATCAATGCGAGAAAACATTCGCGCGTAGACACGAGCTGAGTCTACATTTGCGCGTCCATACAGGGGAAAGACCCTATTCGTGCCACGTTTGCGGCAAGTCGTTTTCTCAGTCGGGCTCGCTTCGCACGCATATCGTCACGCATTCCGAAGCTCGCCCGTTCGCTTGTGAGATTTGCGGCTCGAAGTTTAAGGACAAGTATACGTTGGCTAAGCATCTGTCTACTCATGCAGCGGGGCCGCCTTGCGCTTGCGTTGTTTGTGGCAGAGAGTATTCGAGTCAACGAAGCGCGGCGGCCCACGCTCGCTCGCACGCTAAAACTAGGACGCCATGCGATAAATGTGGGAAGACTTTCAGTAATGTGGCGCATTTGAGACGGCATGAGCGGAATGTTAGGTGTGTGAGGGAGAGGGTAGGTGATGGTTGA
- Protein Sequence
- MSDSLCCVCLCGDFRLKCIEDEELLNIFEQLTNFKVWGPMCAACECQLRHCGQFSRTARRSQSLLTDIAHRGLKVTRETLAELKVQPIRVLSISNPRSMHSVDILHDDETNIKYEVLVKVEEVSEDDKDIESNKDDDMNKDDIEDIEDDEAVKLSIDNEPTIASVENKSKKISKLVKNNKDDEAVKSIDIEPVKKIGNKSKKISKLANKRTRKKPEIYTCEFCKKIFKRKNEMVVHRRTHTGERPFTCDECPKAFISASNLKYHKISHVPIDDRPRVYSCQQCGNTFSHKMHLRLHLQIHSEKKYACDVCGKSFSMPTRLKNHMRTHSDERTHSCDRCAKCFKTLKVLRDHMLSHTGVKPHSCNQCEKTFARRHELSLHLRVHTGERPYSCHVCGKSFSQSGSLRTHIVTHSEARPFACEICGSKFKDKYTLAKHLSTHAAGPPCACVVCGREYSSQRSAAAHARSHAKTRTPCDKCGKTFSNVAHLRRHERNVRCVRERVGDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -