Cbil025202.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292478.1:4235586-4238542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1 1.4e+02 3.9 0.2 1 23 48 70 48 70 0.90 2 19 0.00023 0.016 16.3 0.6 1 23 144 166 144 166 0.99 3 19 0.014 0.94 10.7 0.1 1 23 170 192 170 192 0.95 4 19 0.072 4.9 8.5 0.4 2 23 198 220 197 220 0.90 5 19 3.2 2.2e+02 3.3 5.6 1 23 226 249 226 249 0.95 6 19 0.00016 0.011 16.8 0.4 1 23 256 279 256 279 0.97 7 19 0.11 7.7 7.8 2.5 1 23 285 307 285 307 0.93 8 19 2.2e-07 1.5e-05 25.8 1.2 1 23 313 335 313 335 0.99 9 19 0.0013 0.088 14.0 0.7 1 19 341 359 341 360 0.96 10 19 0.0097 0.66 11.2 0.4 1 23 421 443 421 443 0.94 11 19 0.03 2.1 9.7 0.1 2 23 472 494 471 494 0.93 12 19 0.0002 0.013 16.5 0.4 1 23 515 537 515 537 0.98 13 19 0.14 9.8 7.5 0.1 1 23 541 563 541 563 0.95 14 19 0.25 17 6.8 2.6 1 20 568 587 568 591 0.87 15 19 0.13 9 7.6 3.1 3 23 599 620 599 620 0.97 16 19 0.00048 0.033 15.3 0.2 1 23 627 650 627 650 0.97 17 19 2.1e-06 0.00014 22.7 1.3 1 23 656 678 656 678 0.98 18 19 8.6e-06 0.00059 20.8 2.9 1 23 684 706 684 706 0.98 19 19 4.6e-05 0.0032 18.5 4.8 1 23 712 735 712 735 0.96
Sequence Information
- Coding Sequence
- ATGATCAAACGTTTCAATGCGAGAGTCAAACTACAGGCTCCAGCCAAACCTCACAGCATTGAAATCAAAGCCAGACAACGCCGCGTCCTAACACTTCTGGAGTGTTCCAGAATATGTCCCTTTAAATGGAAAAAGAATACATTTTTCTGCATTTATTGCAATAATGGTTACGTGGATCCTGCTAAATTGAGGGAGCATAATTCTGTGCATGAAGATATAAAACATCTCCAGATAAAAAGAGCTATCGCTAAAATCAATACAACGGAATTGCTAAAAGCTGATATCACAGACACCAGTTGTAAACTATGCAACACTGCAATAGATAGTTCAATAGAATCGCTCGTGAAACATCTTTCtgaaaatcataaaaagaaAATCGAACCAAATTCTGATGTAGGAATAATTCCTTTCAAAAACACGCTGGATGATTACAAATGCACACTTTGTGgtgtaaaatatgaagagtATATTACTCTGAAGCGTCATATGAACATACATTTTCCTAACTTCGTTTGCGAACAGTGTGGTTCAGGTTTCGTTTCAGCGGGAAGGCTGAAGGTACATGCTTTTTCCCATGAAACAGGATCCATTCCGTGCGAAGCTTGCGACAAAGTTTTTCGCTCCTACAACTCAAAGAAATCACATTTTGAAAGCGTGcatatgaaaataaaaagacaCAGCTGTCCACAATGTTCTGAAACATTCTTGCATCATTATCAGAGACTGAAGCATATATCGTCAGTCCACAGGATGAAAGTGAAAGAATTCAAGTGTGACTTATGTCCGAAAGCGTTCATAGGAAGTGGGAAGTTTCACGCACACATTCGTAACGCGCATTTGAAAGAGAAACGTCACACATGTATTGTTTGTGAGGCGAAATTCTTCACCTCTACTTTACTAAAGAATCACATGTTTTCACATTCTGAAAAGAAGAACTATCAGTGTGGTGTGTGCCAGAAAGCGTTTAAGCAGAAATCTACTTTAGGGACACATATGCGGACTCATACGAATGATAAAAGGTTTGCCTGTAATGTTTGTGGGAGTTCCTTTACGCAGAAAAGCGTTCTAAAGCACCACGgtGTTGATGAACCTCCGGACGATACTCAAGAAGACATTATCACACAGACTGATGCTAAATCAAAGACACAGCCGATGCAAAATAATTACAACACAAAAATCAAATACATGCAAATCAGGCAGTGCGTCGTAACACTTCTGGAGAGTTCCAGATTATGTCCATTCACATGGATGAGGAATTTATATTTCTGCATGTACTGTGATCAGAGATACGAAGACCCCGCCAAACTAAGAGAACACTTTATCGAACATGAAGATATAAAACTCACAATGATAAAACACGCCCTACGCAAACAAAGGAGACATGAATTGTTAAAAGTGGATATAACAGACGTTAGCTGTAAGCTTTGCAATACGCCAATAGATAGTTTAGATAATCTTATCAGACATTTATCTGAAAATCATCAAAAGAACATCAACCAGGCATCTGATGGAATCCTACCGTTCAAAATTAACATAAACGATTTTAAGTGCGCTATATGCGGTGAGAAATACGCTGAATACAAGACTCTCAATAGTCACATGAACCTTCATTATCAAAATTTCATTTGCTCTATATGTGGAGCTGGTTTTCTTAATCCAGCTAGATTAAGGATACATTCCTTTACTCATGAATCAGGATCTTATCAATGTGATGCTTGCGAGAAAGTATTTCGCTCTCACTACGCTAAAAACGAACATTTCGTACACGTACATAAAAAGGTTAAAAGAAACGGGTGCCCACATTGCCCTGAGACATTCCAACACTACTTCCAAAAGTTGAAACACATATCTTCGGTCCATGGGATGAAGTTAAAGGAATTCAAATGTGATCTCTGTCCAAAGGTTTTCATTATTAGGGGAAAGCTATTAGTACACGTACGCAATACACATTTGAAGCAGAAACGGTACCCTTGTGATGTCTGTGAATGGAAATTCTGTTCCAAATCGGATCTAAAGATTCATATGTTGAAACATACTGGCGAGAAGAAGCATCAATGTACTGTCTGTAAGAAAGCTTATGGGAGGAAGTATACACTGAAGGAGCATATGAGAATACACGAGAACGACAGACGTTTTGTGTGCACGATTTGCGGGAAAGCTTTCGTGCAAAAATGCAGTTTAAAACACCACTCGAAAATGCGTCATCCGAATCCAGATGATGAATTTTCCGATCATTCGGTGGACTAA
- Protein Sequence
- MIKRFNARVKLQAPAKPHSIEIKARQRRVLTLLECSRICPFKWKKNTFFCIYCNNGYVDPAKLREHNSVHEDIKHLQIKRAIAKINTTELLKADITDTSCKLCNTAIDSSIESLVKHLSENHKKKIEPNSDVGIIPFKNTLDDYKCTLCGVKYEEYITLKRHMNIHFPNFVCEQCGSGFVSAGRLKVHAFSHETGSIPCEACDKVFRSYNSKKSHFESVHMKIKRHSCPQCSETFLHHYQRLKHISSVHRMKVKEFKCDLCPKAFIGSGKFHAHIRNAHLKEKRHTCIVCEAKFFTSTLLKNHMFSHSEKKNYQCGVCQKAFKQKSTLGTHMRTHTNDKRFACNVCGSSFTQKSVLKHHGVDEPPDDTQEDIITQTDAKSKTQPMQNNYNTKIKYMQIRQCVVTLLESSRLCPFTWMRNLYFCMYCDQRYEDPAKLREHFIEHEDIKLTMIKHALRKQRRHELLKVDITDVSCKLCNTPIDSLDNLIRHLSENHQKNINQASDGILPFKININDFKCAICGEKYAEYKTLNSHMNLHYQNFICSICGAGFLNPARLRIHSFTHESGSYQCDACEKVFRSHYAKNEHFVHVHKKVKRNGCPHCPETFQHYFQKLKHISSVHGMKLKEFKCDLCPKVFIIRGKLLVHVRNTHLKQKRYPCDVCEWKFCSKSDLKIHMLKHTGEKKHQCTVCKKAYGRKYTLKEHMRIHENDRRFVCTICGKAFVQKCSLKHHSKMRHPNPDDEFSDHSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -