Cbil000461.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:3880705-3883002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.1e-06 0.00021 22.2 3.7 1 23 11 34 11 34 0.95 2 21 0.0015 0.1 13.7 1.0 2 23 40 62 39 62 0.94 3 21 7.3e-06 0.0005 21.0 0.5 2 23 71 93 71 93 0.97 4 21 6.9e-06 0.00047 21.1 0.9 2 23 102 124 101 124 0.92 5 21 0.002 0.14 13.4 0.3 2 23 132 154 132 154 0.94 6 21 3.9e-05 0.0026 18.8 1.3 2 23 162 184 161 184 0.95 7 21 6.7e-06 0.00046 21.1 0.9 1 23 190 213 190 213 0.96 8 21 0.00074 0.051 14.7 1.8 1 23 245 268 245 268 0.94 9 21 0.16 11 7.4 2.4 1 23 294 316 294 317 0.96 10 21 4 2.8e+02 3.0 0.6 2 21 325 344 324 345 0.88 11 21 0.019 1.3 10.3 0.8 2 23 354 376 354 376 0.92 12 21 0.0065 0.44 11.8 6.7 1 23 399 422 399 422 0.96 13 21 0.00022 0.015 16.4 0.7 2 23 429 451 428 451 0.96 14 21 7.7e-05 0.0052 17.8 2.6 2 23 458 480 457 480 0.94 15 21 0.014 0.99 10.7 1.5 1 23 486 509 486 509 0.96 16 21 0.17 12 7.3 6.7 2 23 517 539 517 539 0.95 17 21 6e-05 0.0041 18.2 0.1 1 23 546 569 546 569 0.97 18 21 0.024 1.6 10.0 1.5 1 21 576 596 576 599 0.88 19 21 0.045 3 9.1 2.8 5 23 616 635 613 635 0.90 20 21 4.3 3e+02 2.9 0.1 3 12 656 665 654 669 0.86 21 21 8.3 5.7e+02 2.0 1.0 1 12 684 695 684 698 0.89
Sequence Information
- Coding Sequence
- ATGGCACTAATGTAtccaaataatttagatttctACTGTGACTATTGTGACCGACCATTCACAAGAAAGTACAACCTCCAAACCCATATAGAAAACTGTCATAATAATTCATCTTGCTCATGTGAAATATGTGGCTGTAAATTTGGAAGTCCCGCTGGTTTACAGTTACATTTATCTCGGGGTCACAATACACACGGACAATCTTCCCCAGAATGCGATATATGCGGAAGATTTTTTACAAGAAAACAGAACATAACATCCCATATGATAACCGTGCATTTACAAGGCATAGGACCTGAAATAAGATGCAAGATTTGCGAGAAGGTATTTACCACAGAACGGAATTTAAAAAGACACGTGACCCAACTACACAATCCCGACGTACATTACCCTACTTGTTATgagtgcaataaagtatttaaaaGCACAATCTCTTTAGATGTGCATTTAAAAGCTGTCCACAACGAGAATGAGAGGATTATACAATGTTATCTTTGTAAAAAGGTGTACACGAATAACAGAAATCTGAAGAGACACGTAGAAATGTTTCATGGCAAAAAAGAGGAATTTAAATGTGAAAATTGTCCTAAAATCTACACTTCCAATCAAAGTTTAAGACGTCATATTAAAGCTAGTCATAACACTGATACTGACGATCAGAGAACTGATAACAAGTCTATTGTTGACAACGACAGTGACGATTCTAGTGATTTTAATGATGAAATGAACGCGTTCTTATGCGAGACTTGCAAGAAACCGTTCTGTGACGAACAACTTCTACGTAGTCATATTAAACTAGATCATTCCTTTGATACGTTCTATCAGTATTGCAAGAATTATTTGCTAAAACAGAACAAGGTAAGAATGACGCAGCGGGTGTTTAAATGCGAGTTTTGTTTCTCAGCATTTCTAAGTGTTTACGAACTGAAAGATCATATGAAAATCCATCATGACATAGACTACTGCTTATCAACTTGCAACGTATGCTTCAACAAGTTTTACAGTAAAGAAACTATGGGAGAACACAAGAAGATATGCTTACCACCTCCTGACGTAAACTCCTGCAATTACTGCGATAAACTTTTCACTGATATCTCTAGCTTAGAGTTTCATTCGAGAATATTTCATCCACAATCACAGATCGCCGACTCTTACATCTCTTCAACTAAAGACGATCCGACTGACGTCTGTTCGTACAAATGTCGACACTGTGATCGGATGTACTACAGTGAACGCTCTTTAAAACACCACGTGAAACTGAAACACACGGCTGTTGAGACAGTAGAATGTGAGTACTGTTCAAAGATTTGCAACAACAAATACTACCTTGCATCGCATATTAAGATCGTCCACAATAACGATACTTGGTCGAAATGCGACTATTGCGAAAAGAAATTCAAGTCTAAAAGAAATATACGTCGTCACATCGAATACACACACATGGGCATGCAAAGATACAAGTGTATTGAATGCGAAACTCTCTTTAAAGAAAAACGCAGCTTGCggaaacatgttaggataaagcACCCTGATTCTACCAGCTTTCCTCAATGCCATATCTGCCACAAAAGATTCGAATCAGCCAAGTCTTGCAAAATCCATCTAAAACTTATTCATTCCTTCAATATGAACACATACCCTTGCGATCTGTGTTCAGTATCCTTCAGTTCGAAAGAAGCTCTGAAAATCCACCTAGCAACCAAACATTTGGCCGAAGACGAGATTTACAAATGCGAAGACTGCAATTTGGTCTTCAAAGGGTCTCCAAAGTTCGAGGAACACAATGAATTGTGCCATGCGAGTTTCATCCCTAGTCCAAAGCAGAAACCGCTTCCTAGATGCATTCTTTGCATGAAAGATTTCAGTACACGCAAAACCCTAAAACGGCATATCAAGAAGTTCCATACAGACTTTGAGGTGGAAGAACTGACGAACTACACATCTTATAGCCGAATAGCCATAGATTGCGAGCAATGTTTGAAAAGCTTCAGGGACGATCGCAACATAAGCATCTTTAACAGAGTCAAACAGTCCCGCAGTGCTCTAGTCTTCAAATGTGACAGTTGCAAAACCTCCTATAACTCCTTAGAGTTTGCAATACAGATGCAAAAGTTTACGCAAGAGAAGTCTATGGTTCTCAGCGAGTTGTGTACTACACACATGAGCGATGAAGAAGCATCTTGCTCTGGATTTGGTTCCTTGCATGAATATATGGAACCGGAAAGTACAACGGCAGATTTAAAGATAGAACTGATAGATTTGGATGAGTATGTAAAAATAGAACCAGTTTCCCCTTAA
- Protein Sequence
- MALMYPNNLDFYCDYCDRPFTRKYNLQTHIENCHNNSSCSCEICGCKFGSPAGLQLHLSRGHNTHGQSSPECDICGRFFTRKQNITSHMITVHLQGIGPEIRCKICEKVFTTERNLKRHVTQLHNPDVHYPTCYECNKVFKSTISLDVHLKAVHNENERIIQCYLCKKVYTNNRNLKRHVEMFHGKKEEFKCENCPKIYTSNQSLRRHIKASHNTDTDDQRTDNKSIVDNDSDDSSDFNDEMNAFLCETCKKPFCDEQLLRSHIKLDHSFDTFYQYCKNYLLKQNKVRMTQRVFKCEFCFSAFLSVYELKDHMKIHHDIDYCLSTCNVCFNKFYSKETMGEHKKICLPPPDVNSCNYCDKLFTDISSLEFHSRIFHPQSQIADSYISSTKDDPTDVCSYKCRHCDRMYYSERSLKHHVKLKHTAVETVECEYCSKICNNKYYLASHIKIVHNNDTWSKCDYCEKKFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRIKHPDSTSFPQCHICHKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFSSKEALKIHLATKHLAEDEIYKCEDCNLVFKGSPKFEEHNELCHASFIPSPKQKPLPRCILCMKDFSTRKTLKRHIKKFHTDFEVEELTNYTSYSRIAIDCEQCLKSFRDDRNISIFNRVKQSRSALVFKCDSCKTSYNSLEFAIQMQKFTQEKSMVLSELCTTHMSDEEASCSGFGSLHEYMEPESTTADLKIELIDLDEYVKIEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528500;
- 90% Identity
- iTF_01528500;
- 80% Identity
- -