Cbil011550.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292460.1:14912397-14914077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00077 0.053 14.7 4.0 1 23 112 134 112 134 0.97 2 14 0.0059 0.4 11.9 4.4 1 22 140 161 140 161 0.90 3 14 5.1e-05 0.0035 18.4 1.3 1 23 180 202 180 202 0.95 4 14 0.00012 0.008 17.2 0.1 1 21 208 228 208 229 0.95 5 14 1.2e-06 8.3e-05 23.5 0.5 1 23 240 262 240 262 0.98 6 14 4.6e-06 0.00031 21.7 3.0 1 21 268 288 268 289 0.96 7 14 0.013 0.85 10.9 3.6 2 23 298 320 297 320 0.94 8 14 0.011 0.75 11.0 5.3 1 23 326 348 326 348 0.97 9 14 7.7e-06 0.00053 21.0 0.9 1 23 354 376 354 376 0.96 10 14 0.00037 0.026 15.6 1.1 1 23 382 404 382 404 0.96 11 14 4.2e-07 2.8e-05 24.9 1.5 1 23 410 433 410 433 0.98 12 14 0.0014 0.094 13.9 0.0 1 23 439 461 439 461 0.97 13 14 2.7e-05 0.0019 19.2 0.4 1 23 467 489 467 489 0.98 14 14 0.021 1.4 10.1 0.2 1 21 495 515 495 516 0.90
Sequence Information
- Coding Sequence
- ATGGCACGCAGATCAGAGAGAATTCTTGTGGATCTGTTTATCAGTGGCATTGACAAGATAACAGCCTGTGCTGCACTGAATATAGAAACATCAACCCTGTCAATAGTACCTGCACAGACCATTTCTATTGGTGAAGAGTTTTTAACTGAATGTGCTGGTAACCCATCTCTGTCAAATTCATCAAACAGACGAATTATTAGTATGCATAGTCCAGTCACCATTAAAGTAGAGACAAATATCAAAGATGAAGATTCAGTTAAGTATGAAAGAACTGACAGTGAAGACAGTGATGATAACCAATCTGCCGTTAAAGACGAAGGAAATACCAACACATTCTGTTGTGATATGTGTAGTAAAACATTTGCCACAATACATCTGCTCAAATCTCACTTAATAAGTCATTCCGGAGCAAAGCCACACAGTTGTATTAAGTGCAACAAATCCTTCTCCAGAAAACACAATATGGTTCAGCACAGGAAAACTTGTAATAGTAAAGAGCAGGTCAAAAGTGAAGCAGAACAGGACACAGACTTGTATTTCTACTGTGAAGTCTGTAGCAAAAAGTTTACATCAAAAGCTCTCTTAAAGTCACACAAAGTAATTCATAGTGGGGAGAAACCGTACAGTTGCGAGGGTTGCAGTAAAGCATTCGCTCGGAAGCAAGGCATGAAACAGCATATGTTAATTTGCAGTGAAGTTAAACCGCACGTGCCAACATTCCCCTGTCCCTACTGCACTCAGACATTCAACTCCGAAAGCGATTTAAATACTCACATCACAACTCACCCAAAGGACAAGCCATACACATGTGAGAAATGTCACAAATCATACACAACAAAACAGAATTTGAAACAGCACTTGAAGATATGCTTCCTTGAAAACGAAGTGGTCACTTGCTCGCTGTGTCCCCAAACATTTACCTGTAGAAGCGATTTGTGCAAGCATCTGAATGCGGATCATGCTTCTCAAAAGCCGTTCTGCTGCGACCGTTGCAGCGCTAAATTCTGGTACAAAAGCCACTTGAAGGTGCATATGAGGATCCACACTGGAGAAAGACCCTTCGCCTGCGAGGTATGCGGTAAAACGTTCACGCTACGGAACCATTTAAAAGCGCATCTTGGCAGCCATTCAGGGCTGAAGCCTCACGCCTGTGAGCTGTGTGGAAAAGCATTCCTCGCGCGTTTCAACTTGAGGGAACACATGCGACGACATACAGGCGAGCGGCCCTATCCGTGCGGCACCTGCGGGAAAAGTTTCGGACATCAAAGCACTTTGAGACAACATTTGCGCAGAGTTCACGCGCAGGCGAAACCGTTCGCTTGCGATAAATGTCCGTTATCCTTCGCGTTGGAGAGCGGGTTAGCATCACATGCGCGCGTTCACACCGCTGCCCGCCCTTACGCTTGTAGCATTTGTGATAAAACCTTCTTTGAGGCGCGGTATCTGAAGGGGCATATGCAGGTGCATTCCGCGATGCGTCCTCACGCGTGTGCGGCTTGCGGAAATGCGTACAAACGCCCTGAACATCTAAAGTTACATGTCAAGTCTAAGTGCAAGGCTGGCTTCGCTTTATCCACGTGTCTGCCGTTTGAGATGAAGTAA
- Protein Sequence
- MARRSERILVDLFISGIDKITACAALNIETSTLSIVPAQTISIGEEFLTECAGNPSLSNSSNRRIISMHSPVTIKVETNIKDEDSVKYERTDSEDSDDNQSAVKDEGNTNTFCCDMCSKTFATIHLLKSHLISHSGAKPHSCIKCNKSFSRKHNMVQHRKTCNSKEQVKSEAEQDTDLYFYCEVCSKKFTSKALLKSHKVIHSGEKPYSCEGCSKAFARKQGMKQHMLICSEVKPHVPTFPCPYCTQTFNSESDLNTHITTHPKDKPYTCEKCHKSYTTKQNLKQHLKICFLENEVVTCSLCPQTFTCRSDLCKHLNADHASQKPFCCDRCSAKFWYKSHLKVHMRIHTGERPFACEVCGKTFTLRNHLKAHLGSHSGLKPHACELCGKAFLARFNLREHMRRHTGERPYPCGTCGKSFGHQSTLRQHLRRVHAQAKPFACDKCPLSFALESGLASHARVHTAARPYACSICDKTFFEARYLKGHMQVHSAMRPHACAACGNAYKRPEHLKLHVKSKCKAGFALSTCLPFEMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528521;
- 90% Identity
- -
- 80% Identity
- -