Cbil000266.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camptogramma bilineatum
Gene Symbol
-
Assembly
GCA_958496255.1
Location
OY292450.1:1476724-1481072[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.9e-06 0.00013 22.9 5.1 1 23 174 196 174 196 0.99
2 20 0.00025 0.017 16.2 1.1 1 21 201 221 201 222 0.95
3 20 5.2e-06 0.00035 21.5 4.6 1 23 240 262 240 262 0.96
4 20 2.7e-05 0.0018 19.3 3.8 1 23 268 290 268 290 0.97
5 20 0.00011 0.0074 17.3 0.1 1 23 296 318 296 318 0.97
6 20 1.5e-06 0.0001 23.2 2.3 1 23 324 346 324 346 0.98
7 20 0.005 0.34 12.1 0.7 1 23 352 374 352 374 0.94
8 20 4.1e-07 2.8e-05 25.0 0.8 1 23 380 402 380 402 0.98
9 20 0.00042 0.029 15.5 4.5 1 21 408 428 408 429 0.96
10 20 1.2e-06 8.5e-05 23.5 4.8 1 23 468 490 468 490 0.99
11 20 8.4e-06 0.00057 20.8 1.9 1 21 495 515 495 516 0.96
12 20 5.2e-06 0.00035 21.5 4.6 1 23 534 556 534 556 0.96
13 20 2.7e-05 0.0018 19.3 3.8 1 23 562 584 562 584 0.97
14 20 8.7e-05 0.0059 17.6 0.2 1 23 590 612 590 612 0.97
15 20 2.4e-06 0.00016 22.5 3.6 1 23 618 640 618 640 0.99
16 20 7.4e-05 0.0051 17.9 1.0 1 23 646 668 646 668 0.98
17 20 4.1e-07 2.8e-05 25.0 0.8 1 23 674 696 674 696 0.98
18 20 2.7e-05 0.0018 19.2 2.1 1 21 702 722 702 723 0.96
19 20 1.8e-07 1.2e-05 26.1 0.7 1 23 748 770 748 770 0.98
20 20 1.7e-06 0.00012 23.0 2.3 1 21 776 796 776 797 0.96

Sequence Information

Coding Sequence
ATGTCTAACAATGCTGTGTGCAGGGCGTGTGTTGTTAGAGACGTGAAAATGGTCGTAATCGAAaaggaaataaaagaaatatacGAAAGACTGACCAACAACGAGTTGAGCTTTGATGATGGGATGCCGGAGACAGTCTGCTTCATCTGCTACTCACAGCTGCAGCGATGCAGGAAGTTCTCCGAGACAGCTCTCCACTCGGAGAGGCTGCTGAGAAGTCAGTTAAACAGAgataatGCAACAGAAAGCCGGCCATGGCCCTACTTAGACCTCCAAGTGGTTGAAACTATATCCGTGACAGTTGCGAGATCAGAGAGTTCAACTAACGATGAACTGGAGAACATACAAAACAATGATGTGTGCACTAATGTGCGTCCGATAGACATTAAGCTTGTTAAGATAGAGGTAGATGTGAAGCAAGAAAATGAAGATATCAAGTCAGAGAAGATACTCGCTGACGTTAAAGATGATATGGATATGGATGACTATTTGCAAAACGACGGCGATTACGATGACTGTTTCCAATGTAATGAGTGCGAcaagaaatttaaaacaaaaaaacaaatgaaaaagcATTTAAAATCACACAGCAAAAAAACTTTCGCATGCACCAAATGTAGCAGGTCTTACTCCCTAAGATACAGTCTCAACAAGCATATGAAAATATGCAAAGGAAAGATCAAAAGTAGCTCAACTAATGCAGCCAACGAACGCTCGTATTTATGTGAACTATGCAGCAAACAATTCAAAACTTCATCCCATTTCCAAAAGCACATGAGAGTTCATGCAGGTGTTAAAAAGCACTCGTGCGAATTATGCGGTAAAGCATTCACGCACTTGTATAACTTCAAAATGCATTTGCAAGTTCATGAGGGAAATAAGCGTTTTGCTTGCGAAATCTGCGGTAGAGCATTCTTGGTAAAAGGCACTTTGACAGATCACATGCGGCGGCATACAGGCGAACGTCCATTTCAATGCAATACTTGCGGAATTAAATTCAGTTTCAGGAGCAGTTTAAAACGACACATTAAACTACATGCTGAAGTCAAACCGTACCCTTGCATTCAATGTCATTTATCTTTTAACGATGAAACGGGCTTAACGTCGCACATGAAAGCGCATACCGCAGAAAGGCCGTATCCTTGCAATAAATGCAATAAAGCATTCACTTACGCCCGTGGTCTTACACGTCATATGAATATGCATTCTGATGAAAGGCCTTATAAGTGTACCAAGTGTGGGAGCGCTTTTAAAAGGTCATCGGGTTTGTGCCATCACTATAAGTCGTTAAAATGTAAGACTGTTAAGACTATAGATATCATCAAATCAGAGGAGATACTCGTTGACGTTAAAGATGATATGGATGACAATTTACAAAACGACAGCGATTCCGAAGACTGTTTCCAATGTAATGAGTGCGAcaagaaatttaaaacaaaaaaacaaatgaaaaatcatttaaaaacacACAGCAACAAAACTTTCACATGCAACAAATGTAGCAGGTCCTTCTCCCTAAGATACAATCTCAACAAACATATGAAAATATGCAAAGGAAAGATCAAAAGTAGCTCAACTAATGCAGCCAACGAACGCTCGTATTTATGTGAACTATGCAGCAAACAATTCAAAACTTCATCCCATTTCCAAAAGCACATGAGAGTTCATGCAGGTGTTAAAAAACACTCGTGCGAATTATGCGGTAAAGCATTCACGCACTTGTATAACTTCAAAATGCATTTGCAAGTTCATGAGGGAAATAAGCGTTTTGCTTGCGAAATCTGCGGTAGAGCATTCTTGGTAAAAGGCACTTTGAAAGATCACATGCGGCGGCATACAGGCGAACGTCCATTTCAATGCAATACTTGCGGAACTAAATTCAGTTTCAGGAGCAGTTTAAAACAACACATTAAACGACATGCTGAAATTAAACCGTACCCTTGCAGTCAATGTCATTTATCTTTTAACGATGAAACGGGCTTAACGTCGCACATGAAAGCGCATACCGCAGAAAGGGCGTATCCTTGCAATAAATGCAATAAAGCATTCACTTACGCACGTGGTCTTACACGTCATATGAATATGCATTCAGATGAAAGGCCTTATAAGTGTACCAAGTGTGGGAGCGCTTTTAAAAGGCCATCACATTTGTCCCAGCATTATAAGTCGTTAAAATGTAAGACTGTTAACGATGAAACGGGTTTAACTTCCCACATGAAAGCGCATACCGCAGAAAGAGCATATCCTTGCAATAAATGCAATAAAGCATTCACTTCCGCACGTGGTCTTACACGTCATATGAATATGCATTCAGATGAAAGGCCTTATAAGTGTACCAAGTGTGGGAGGGCTTTTAAAAGGCCATCACATTTGTCCCAGCATTATAAGTCGTTAAAATGTAAGGCTGTGAGTAACTAA
Protein Sequence
MSNNAVCRACVVRDVKMVVIEKEIKEIYERLTNNELSFDDGMPETVCFICYSQLQRCRKFSETALHSERLLRSQLNRDNATESRPWPYLDLQVVETISVTVARSESSTNDELENIQNNDVCTNVRPIDIKLVKIEVDVKQENEDIKSEKILADVKDDMDMDDYLQNDGDYDDCFQCNECDKKFKTKKQMKKHLKSHSKKTFACTKCSRSYSLRYSLNKHMKICKGKIKSSSTNAANERSYLCELCSKQFKTSSHFQKHMRVHAGVKKHSCELCGKAFTHLYNFKMHLQVHEGNKRFACEICGRAFLVKGTLTDHMRRHTGERPFQCNTCGIKFSFRSSLKRHIKLHAEVKPYPCIQCHLSFNDETGLTSHMKAHTAERPYPCNKCNKAFTYARGLTRHMNMHSDERPYKCTKCGSAFKRSSGLCHHYKSLKCKTVKTIDIIKSEEILVDVKDDMDDNLQNDSDSEDCFQCNECDKKFKTKKQMKNHLKTHSNKTFTCNKCSRSFSLRYNLNKHMKICKGKIKSSSTNAANERSYLCELCSKQFKTSSHFQKHMRVHAGVKKHSCELCGKAFTHLYNFKMHLQVHEGNKRFACEICGRAFLVKGTLKDHMRRHTGERPFQCNTCGTKFSFRSSLKQHIKRHAEIKPYPCSQCHLSFNDETGLTSHMKAHTAERAYPCNKCNKAFTYARGLTRHMNMHSDERPYKCTKCGSAFKRPSHLSQHYKSLKCKTVNDETGLTSHMKAHTAERAYPCNKCNKAFTSARGLTRHMNMHSDERPYKCTKCGRAFKRPSHLSQHYKSLKCKAVSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-