Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0033 8.7 7.1 0.4 18 40 8 27 3 30 0.86

2 9 5.3e-05 0.14 12.9 0.8 18 40 36 55 28 58 0.89

3 9 0.00067 1.8 9.3 0.9 17 39 63 82 56 86 0.87

4 9 2.1e-05 0.055 14.2 6.2 1 40 76 111 76 114 0.94

5 9 0.013 34 5.2 0.2 14 40 116 139 111 142 0.83

6 9 0.0008 2.1 9.1 2.5 15 41 145 168 132 170 0.76

7 9 0.00044 1.2 9.9 2.6 1 40 160 195 160 201 0.92

8 9 0.13 3.4e+02 2.0 2.3 3 40 190 223 188 226 0.76

9 9 0.046 1.2e+02 3.5 2.2 18 38 232 249 216 251 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0033	8.7	7.1	0.4	18	40	8	27	3	30	0.86
2	9	5.3e-05	0.14	12.9	0.8	18	40	36	55	28	58	0.89
3	9	0.00067	1.8	9.3	0.9	17	39	63	82	56	86	0.87
4	9	2.1e-05	0.055	14.2	6.2	1	40	76	111	76	114	0.94
5	9	0.013	34	5.2	0.2	14	40	116	139	111	142	0.83
6	9	0.0008	2.1	9.1	2.5	15	41	145	168	132	170	0.76
7	9	0.00044	1.2	9.9	2.6	1	40	160	195	160	201	0.92
8	9	0.13	3.4e+02	2.0	2.3	3	40	190	223	188	226	0.76
9	9	0.046	1.2e+02	3.5	2.2	18	38	232	249	216	251	0.83

Coding Sequence: ATGCACACTGCAGATTCTTTTATATGCGGCAACTGCGGCAAGATATTTACTGAAAAAGGTAATTTGCAACAGCACATGAGAGTCCATACAGGAGAGAAACCATATGCATGCTACACATGCAATAAAGCATTTTCCATAAGCTCCAATTTTAAAAGACACCTGAGAATCCATTCCGGAGAGAAACCATTTACATGCAACAGGTGCGACAAAGCATTTAATACAAGCTCCAATCTAAAATCTCACATCAGTATTCACACCGGAGACAATGTATATCCTTGCAACCAATGCAATAAGACATTCTCCAGAAAATCATGCCTCAAAATCCATATGAGAATCCATACAGGggaaaatttgtttgtttgcaacCAATGCAGTAAACCATTTGCCAGAAACTCATTCTTAAAAGCGCATATGAGGATTCACACTGGATTAAAGCCATATGCCTGCAATCAATGTAACAGTACATTCTCCAAGAGCTCAAACTTAAAAGCGCATGTTAGAAAACATTCTGGGGAAAGACCATGGTCCTGCACTGGTTGCAATAAAACATTTACTGCAAACTCATCCTTAAAAGCGCACATGAGAATTCATAGTGGCGAAAGACCTTATGCTTGCGACAGATGCTATAAAACATTCTCATCTGGGTCGCACTTAAAAGTCCATATGAGAATCCACACAGGAGCAAAGCCATATGCCTGCACTAGATGTGATAAGACATTTTCTACAGGCTCTAACTTAAAATCACATGCAAAGATCCACACTTAA
Protein Sequence: MHTADSFICGNCGKIFTEKGNLQQHMRVHTGEKPYACYTCNKAFSISSNFKRHLRIHSGEKPFTCNRCDKAFNTSSNLKSHISIHTGDNVYPCNQCNKTFSRKSCLKIHMRIHTGENLFVCNQCSKPFARNSFLKAHMRIHTGLKPYACNQCNSTFSKSSNLKAHVRKHSGERPWSCTGCNKTFTANSSLKAHMRIHSGERPYACDRCYKTFSSGSHLKVHMRIHTGAKPYACTRCDKTFSTGSNLKSHAKIHT

Sequence clustering based on sequence similarity using MMseqs2