Cnol006903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Campoplex nolae
Gene Symbol
-
Assembly
GCA_037893425.1
Location
JBBLXU010001562.1:100986-103622[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0004 0.033 14.7 0.4 1 23 426 449 426 449 0.97
2 10 5.5e-06 0.00046 20.5 0.5 1 23 455 477 455 477 0.99
3 10 3.6e-06 0.0003 21.1 0.9 1 23 483 505 483 505 0.98
4 10 0.04 3.3 8.4 0.8 1 23 511 533 511 533 0.98
5 10 3.9e-06 0.00033 21.0 0.3 1 20 539 558 539 559 0.96
6 10 0.037 3.1 8.5 2.4 1 23 568 588 568 588 0.94
7 10 1.6e-06 0.00013 22.2 0.5 3 23 596 616 595 616 0.98
8 10 0.00016 0.013 15.9 1.4 1 23 622 644 622 644 0.98
9 10 0.0031 0.26 11.9 2.6 1 21 650 670 650 673 0.96
10 10 0.028 2.4 8.8 1.0 1 22 679 700 679 700 0.95

Sequence Information

Coding Sequence
ATGACGAACGATCGACGGACGATCGTCTCGAGCTCCGAGTCGTCGCAATTTTCGCAGCAAGAGACCGTTCAGCTGACGGAATTGTTGCCGGTGGAGCAATCGAGGATTAAACTTATCCCGGATTACACGGATCAAGAAGAGACTACCGATGGCTTACGAGCTCTCAGAAGTTTCGCCGCTCGCGGCGAACATCAGGATTTTTTACCGGAGCGCCAATACGATTCTTCTTATCGTAAAATCGAAGCCTCCGTTTGCGCAACCGTTTTGCCGGACGGACCCCATCGTtacccgaagaaaaaaagaaaaaatgtccacGCTGCTGATAACACGATGAAAAACGGAATCACGACGAGGAGCGTTGGAGACGAGGCGGCTCACGATGATGTAGCGttacaaaataatgataaagtatataaaaatgccATGCTCGAGGCAGCTACGTCGACGAGAAGAAGAGGGCTCAaagttgatgatgatgatgatgatgatgatgataatgatgatgatggtgatgatgatgaggaaGAAACTAATTGTGAAGAATGGATTAAAAATCGAGTGCTGGATAAAGAGTGCAGTAGtatggggggaaaaaaattaccaagcCAACAGCAGCCCGAGGAGGAGCTCTCGAATACGATCGATGTCGAGGATGaagtttattattatcgtcggCAACGACCCGATATCGGTCAAACTTTTGCCACGTCGAACGACCAACGAGATGACGAAGACGAGAACGGAAACGACGATAATTCCGTTAcgaatttggaaattttatcAGCCGGAGTTTATCGGGATATGGCCGATAATTTTTCTGGACGAACAAGTAGGCTTACCGCCGAAAATTAtgataatgagaataaaaacaggGAGAaagctgccgccgccgccgccgcctccaagagacgaaaaaatggtCGGAAGAACAAGTCTGTCGGAAGGAAAGAAATGAGCCGCCGACGAGACAACAACGAGggtaccaccaccaccaccaccaccaccaccaccaccaatTATGAAGAATCCGGTGAGGCTGAGAAAGATCTTAGACGAAAAATAGACGGTATAATACAAGCGAATTATTTGCTAGTGGAACGGAAAAATAACAACGCCGTGCCTCGACGAAGCGAAAACGAGGAGACGGGGGGGACGGGAACGGctatgacgacgacgacgacgcgaggaatagattcgaaaatttcatcgaaaaccgGTCATGAGTCATCGACGTCGATAAGAACGAGCTTGGATACGCCGGCGACGACGAAAAAGTATCGGTGCTTGATGTGCGACTCGAGTTTCAAGGGTAGCGGCGGCCTGAGAAATCACTACAAGGTCGTTCACGCTGCCGGGCCTGTGTACAAGTGCGACGAGTGCGGCAAAGAATTTCCTCTCAAGGAGCGTCTGAAGCTTCACGTGCGAACGCATACCGGTTTCAAGCCGTACAAGTGTCCCGATTGTCACAAGAGTTTTGCTCGGGGTGGTCAATTGGTTCAGCACCGGGGTACCCACAGCAAGGTAAAGCCCTATCGTTGCAATTTGTGCGCCGGAACATTCACGTGCGCGGCCAATTTGGCTCTTCATCTCAAGCGCCACAACGGCCAAAAGGATCACAAGTGCGAGATTTGCGGACGTGGATTCGTCAGGAAAGACGCCCTCAAGAAGCATCTCGAGTGCCTTCATCGCGACGTTAAATCCTTTCTCTGCGTAATATGCAACAAAACGTTCAAGGGACATTTGCCTCAGCATATGCGAACTCATGCTCAGGATCGACCTCACGGTTGCGCCACGTGCGGCCAGAGATTCGCCCAAAAGTCCCAACTCACCGTTCATCAGAGGACCCACTCGGGTCAACGACCCTTCAGGTGTCTCGTTTGTTGGCAAGCTTTTGCACACTCGACCGCCCTTAAGCTTCACACGAGGAGGCACACCGGTGAGAGGCCCTTCAAGTGCGCCGAGTGCAACGCCGGATTTACCCAATTACCCCACTGGAAGAAACACATGAAGTGCATACACGGTAGAAACGAGCCGTACAGTTGTAAAAATTGTAACAATTACTTCCGAATCAAAAACGATCTTGAGAATCACGAAAAGACTTGTCAACCTCGAGCAGATACCGTATACGCCGCCGTTTCCgatcaatcaaaaatcgaTCATGTTGTTCCGGAGGATACCGCCGCCATCACGACTATCGCGgcaacgacgacgaccacGACCAAGATCATCGGCGTCAATAGCCTCGAGACCAACAACTCTTCCTCttcgtcctcctcctcctcctcctcctcctcctcctcctcctcctctttgtCCGCGGATACTCCCAAATTTCGGACCATGAACGTGGAACGCATGAGGCTCCTCCTCGCTGTTTTGCTCAAGAGAATTTCTCGACCGGAGAGATTGGACGAACTTGGATTTGGCAAGAGGCTCATCGACGAGGTTCTTCAGGATTCTCTCGTTTCCGCCGGCAAAGTGCCCTCTCGAATCAGCGCCGAGCTCGACGAGCTCGAGAGTCTTCGCAAGAATCTCGAGGTTTTTCTCGAGTGGACCGTACCGAAAGAGCACTGGGATAATTTTCGTAAGATCAACAAAACTCCCGAAGATATACTCGAGACTCTCACAGCCACGTAG
Protein Sequence
MTNDRRTIVSSSESSQFSQQETVQLTELLPVEQSRIKLIPDYTDQEETTDGLRALRSFAARGEHQDFLPERQYDSSYRKIEASVCATVLPDGPHRYPKKKRKNVHAADNTMKNGITTRSVGDEAAHDDVALQNNDKVYKNAMLEAATSTRRRGLKVDDDDDDDDDNDDDGDDDEEETNCEEWIKNRVLDKECSSMGGKKLPSQQQPEEELSNTIDVEDEVYYYRRQRPDIGQTFATSNDQRDDEDENGNDDNSVTNLEILSAGVYRDMADNFSGRTSRLTAENYDNENKNREKAAAAAAASKRRKNGRKNKSVGRKEMSRRRDNNEGTTTTTTTTTTTNYEESGEAEKDLRRKIDGIIQANYLLVERKNNNAVPRRSENEETGGTGTAMTTTTTRGIDSKISSKTGHESSTSIRTSLDTPATTKKYRCLMCDSSFKGSGGLRNHYKVVHAAGPVYKCDECGKEFPLKERLKLHVRTHTGFKPYKCPDCHKSFARGGQLVQHRGTHSKVKPYRCNLCAGTFTCAANLALHLKRHNGQKDHKCEICGRGFVRKDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRNEPYSCKNCNNYFRIKNDLENHEKTCQPRADTVYAAVSDQSKIDHVVPEDTAAITTIAATTTTTTKIIGVNSLETNNSSSSSSSSSSSSSSSSSSLSADTPKFRTMNVERMRLLLAVLLKRISRPERLDELGFGKRLIDEVLQDSLVSAGKVPSRISAELDELESLRKNLEVFLEWTVPKEHWDNFRKINKTPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00265960;
90% Identity
iTF_00265960;
80% Identity
-