Basic Information

Insect: Campoplex nolae
Gene Symbol: SCRT1
Assembly: GCA_037893425.1
Location: JBBLXU010001255.1:768185-770547[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00035 0.03 14.8 0.4 1 23 343 365 343 365 0.93

2 9 0.00065 0.055 14.0 1.4 1 23 371 393 371 393 0.91

3 9 4.3e-06 0.00036 20.9 0.4 1 23 398 420 398 420 0.99

4 9 5.5e-05 0.0046 17.4 0.1 3 23 428 448 426 448 0.97

5 9 4.2e-07 3.5e-05 24.0 0.8 1 23 454 476 454 476 0.98

6 9 6.5e-05 0.0055 17.1 0.2 1 23 483 505 483 505 0.95

7 9 7.2e-05 0.006 17.0 2.4 2 23 512 534 512 534 0.96

8 9 0.00038 0.031 14.7 4.3 1 23 540 562 540 562 0.98

9 9 2.6e-05 0.0022 18.4 2.4 1 23 568 591 568 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00035	0.03	14.8	0.4	1	23	343	365	343	365	0.93
2	9	0.00065	0.055	14.0	1.4	1	23	371	393	371	393	0.91
3	9	4.3e-06	0.00036	20.9	0.4	1	23	398	420	398	420	0.99
4	9	5.5e-05	0.0046	17.4	0.1	3	23	428	448	426	448	0.97
5	9	4.2e-07	3.5e-05	24.0	0.8	1	23	454	476	454	476	0.98
6	9	6.5e-05	0.0055	17.1	0.2	1	23	483	505	483	505	0.95
7	9	7.2e-05	0.006	17.0	2.4	2	23	512	534	512	534	0.96
8	9	0.00038	0.031	14.7	4.3	1	23	540	562	540	562	0.98
9	9	2.6e-05	0.0022	18.4	2.4	1	23	568	591	568	591	0.94

Sequence Information

Coding Sequence: ATGAGCATCAATAATGAAAGTGCTTTCGACAAGTGTCGGTTGTGTTTATGCGAATACGACAAACGTGATCTCACATCAGTTTTTACAAATGAGGATACTCTCGAAATGTCATTAGCCTCAAGAATAATGATTTGTCTCTCCCTTCCGGTAGAAGCCAAAGATTCCTTTCCCGACTCTGTATGCAAAAACTGTGAGCATCGACTAGTACAATTTTATGCATTCCGAGAAGATTGTTTAAACACTTATTATTCTCTGCTGGAACATCGTTCGACTGCTTACTGTAACGAGGAGGAAGAATGTTGCGTAAACGATTCAGTTTTCAATGAACCTGTGACGGCGCCAAACATCGGTATGGGTGAAGCAGAATCGCCGAGTTGTGAGCAGCATCTAGAGGAAAATACACCCGAAAATTATGTCGTTTGTCTGGGCCGCCACTCGGCTGAgaattgtacagaaaaaacATTCCTCAAAGACACAAATTTAGACCCCGACTTTGAAGAAATATCATCTCACGAGCAAGTTATTCACAAActccaaaatgaaattgttccGGCGCATCATTCGGaaactgatttttcttcgcataAATATTCTCTTGATCCTGATGACCGGATCAACAGAGATGTCACGGGAGGAGATAAAGCGCATGAGGAAGACTGCGCTGTTGATGAATCCAGTGAAATAGTCAAATACAAATGTTTACGTTGTAGCAATCTGTTTTCTGATTTAGACGAAGCTTCCATCCACTGCGCGCAGTGCGCACAAGCCGACAATAATGAATTTCTGGATAACGTAACCGAGACCGAGGCTGAGTATTTGTCTGAGCATTCgcaagagaaacgaaagaatctGGATGAAGCTAAAGAATCATCGATAACTACATCGGCAAAACGATCTTGGGACGAAAGCTGCGATTTGGAAATTCAGAGCGAtctggaaaatttgaagaatgagAATTCTAGAATATCTTGTACAAAGTCATCTCCGATAGCTgccaaaaaaaagatgagcCAACCAAAAATAAGGCACTCTTGTCAAGTCTGCGTCAGAGTGTTTTCCAGTGCGGCTTTATTGAGAAGACACTCGGTCGTTCACACCGGTGAACGTCCGTACGAGTGTCCGATATGTAAAAAGCGTTTTTCCCAAATAggacaattgaattttcataaaaatttccacgacAATCCTCGATACCGTTGCGAAATATGTACGAAACCATTTTTACGACCTAGCGACATAGAGAAACACATGAGAACTCACACAGGTGAAAAACCTTACGGTTGTAAAGTTTGCTCCAAATCGTTCGCCCAATTGGTTGCTTTGCAGCAGCACGAAAGAATCCACACCGGTGACAAACCTTACGTTTGTGAAATTTGTGGCAAAAGATTTTCCCAAAAAgctaataaaacgaaacacgTCAAGATACACAAAGAAGGAGCTAAACCGCACACTTGTGGTATCTGCGGCAGAAGCTTTTCCGATCTGGAAGAAATGAATCTTCATCGAGCTGGCCACGGCGGCGGTAAGCCAAGAAAATGCAGTTATTGCAACGAAAGTTTTCGTAAAAAGTCTGAATTGTCACTGCACACGTCGCGTTATCATACTTTTGAGAAATTCCATAAATGTGCTTTTTGCCAAAAAGCATTTCATTCTCTGTACAATCTTAAACAACACGTTATGGTTCATACAGGCCAAAAACCATATGCCTGTTCCAGCTGCGATCTCAGATTCACACAAAAAAGCAATTTGACCAAAcatttcgagagaaaacatGCCGATCGCACGAACAACCAAGACAACAATTATTACATCGTTAAAATGGAAGATCGTTGTGAGCAGAGCAAAGAACAAGAAATTTGGACGTTGGCTAatgatttgttgaaaaattctaatgactCGTTGATTATAGAACGCGAAGAGACCGTGGGAGTTGAAACGTTGGATAATTGCGACACGTGA
Protein Sequence: MSINNESAFDKCRLCLCEYDKRDLTSVFTNEDTLEMSLASRIMICLSLPVEAKDSFPDSVCKNCEHRLVQFYAFREDCLNTYYSLLEHRSTAYCNEEEECCVNDSVFNEPVTAPNIGMGEAESPSCEQHLEENTPENYVVCLGRHSAENCTEKTFLKDTNLDPDFEEISSHEQVIHKLQNEIVPAHHSETDFSSHKYSLDPDDRINRDVTGGDKAHEEDCAVDESSEIVKYKCLRCSNLFSDLDEASIHCAQCAQADNNEFLDNVTETEAEYLSEHSQEKRKNLDEAKESSITTSAKRSWDESCDLEIQSDLENLKNENSRISCTKSSPIAAKKKMSQPKIRHSCQVCVRVFSSAALLRRHSVVHTGERPYECPICKKRFSQIGQLNFHKNFHDNPRYRCEICTKPFLRPSDIEKHMRTHTGEKPYGCKVCSKSFAQLVALQQHERIHTGDKPYVCEICGKRFSQKANKTKHVKIHKEGAKPHTCGICGRSFSDLEEMNLHRAGHGGGKPRKCSYCNESFRKKSELSLHTSRYHTFEKFHKCAFCQKAFHSLYNLKQHVMVHTGQKPYACSSCDLRFTQKSNLTKHFERKHADRTNNQDNNYYIVKMEDRCEQSKEQEIWTLANDLLKNSNDSLIIEREETVGVETLDNCDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265949;
90% Identity: iTF_00265949;
80% Identity: -