Cnol010520.1
Basic Information
- Insect
- Campoplex nolae
- Gene Symbol
- lola
- Assembly
- GCA_037893425.1
- Location
- JBBLXU010002665.1:330897-341913[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.083 7 7.4 1.7 5 21 6 22 4 23 0.92 2 16 0.00025 0.021 15.3 0.2 1 21 53 73 53 74 0.95 3 16 0.061 5.1 7.8 4.1 1 23 82 105 82 105 0.94 4 16 0.00031 0.026 15.0 0.6 1 21 116 136 116 137 0.95 5 16 0.94 79 4.0 7.5 1 22 145 166 145 169 0.87 6 16 2e-06 0.00017 21.9 0.6 1 21 203 223 203 224 0.95 7 16 6.2e-06 0.00052 20.4 2.8 1 23 232 255 232 255 0.96 8 16 1.8e-05 0.0015 18.9 0.9 1 21 273 293 273 294 0.96 9 16 5.8e-05 0.0049 17.3 0.9 2 20 303 321 303 325 0.91 10 16 0.19 16 6.2 0.5 1 21 340 360 340 361 0.87 11 16 0.0012 0.1 13.2 1.1 1 22 369 390 369 393 0.90 12 16 0.00047 0.039 14.4 0.1 1 21 404 424 404 425 0.95 13 16 0.0013 0.11 13.1 2.5 1 23 433 456 433 456 0.95 14 16 0.011 0.96 10.1 0.6 1 22 469 490 469 490 0.94 15 16 5.6e-05 0.0047 17.3 0.6 1 21 518 538 518 539 0.96 16 16 0.011 0.96 10.1 4.3 1 22 546 567 546 570 0.90
Sequence Information
- Coding Sequence
- ATGAATTATTCGTGCAAATGTGGACGTAAATACACGCAGAAATGTTCTCTCGATCGTCACGTTAAGTACGAGTGCGCTTCGAAATTTGTTCTTCGCTACAAGCAGACAGCTAAGCAGCACACCGGCGAAGCAACGGAACCGCCAGATCCGAAGAAATTTCCGTGCGAAAAATGTGGCAAAGTTTACAAATGGAAAGAATCGTTGCTGAAACATCGACGAGTCGAGTGTGGAAAAACTCCTCAATTCGCTTGCCTCGTTTGTGCTAATCGGTTTATGCACAAGCATCATCTTATGAAACATCTCGCGTCCATTCATCAAATCAGCCTGATTAACGAGAATGACCCGCACGTATGCTCCAAATGCGGCAAAGCTTACTTCGCGAAAACATCACTTTGGCGTCATCGACGCGTCGAGTGCGGCCGGACACCGCAGTTCGCGTGTACAACTTGCGGTTTAAAATTTATGCACAAACATCATTTGCTCTGTCATCTACAATCAAATTCTCACTGGACGGAGGTAGCCCGAGGCAATCGTAGAGCGGGTCGCACCGTGACATCGACAGCTCGTAGAGAAGGAGGGCTTCTTCGCCGAGGCCAAGATAATCGATTTCCCTGTCAGAAATGCGGAAGATCGTATCGTAACAAGGGTAGCCTGAAGCGTCATTTGCAAGACGAGTGTGGCAAAGAACCAAAGTATATATGCCACATATGCGAAAAGGGCTTCAAGCAAAAGGCTAATTTCCAGCGTCACAACTCAACGATGCACAGTCGACCACGCTCGAGCTCATGGAATCCTCGTAGCAGCGTACCCAAACCGTATCCTTGCTACAGATGTGAGAGATCGTACACTAACAAGAGCACCCTAAATCGTCATCTAAGGGAGGAATGTGGCATATTGCCACAGAACGTTTGCAGCTTCTGTCAAAAGGCGTTCAAGCAACGATCCAATTATCAACGCCACGTGTGGACCGTACACGGATgcTTAAACATATCCGACTATTACAAACGACTCGGACGTCACTTTTGTTCAACTTGTGGAAAGGAATACAGGTGGATGCAATCTTTGGTGAGACACGAGCGTGAGGAGTGCGGAAAAGCGCCGCAGCATCGGTGTCCTGTCTGCGGTTTGGGGATACGACACAAGTGGATGCTCAAGAAACATTTGATCAAATACGGACATTGCGATTACCACAGGCGATATCGCGGCAGATACGCTTGCGACGTATGCGGCAAGGAATTCACTTGGAAACCGTCGTTGACGAGACACAAGCGCGAAGCTTGTGGCAAAGAACCCAAATTCTCGTGTCCGATATGCTTCAAGAAGCATCGTCGCAGGAGTCAACTGAAGGAGCATCTTCAATGGGTACACAAGTGGAgATATTATCAGTACTACGTACAGACCCCGTTTACCTGCGACAATTGCGGCAAACAGTACAAGTGGCGAGAATCATTGAGTCTTCACAAACGTATGGAGTGTGGAATCGAGCCTCGTTTCACTTGCGATTTCTGTGGACattctcATGTCGACGATCAATCGGAGTATGGATCGAGATTTCCGTGCACAATATGCGGAAAGATATACACGAGAAAATCGTCTCGTTACACTCATCAGAGACTGTGTGGAAAAGAGCCACGTTTCAGTTGTCTTCTTTGCGGAAAACTCTTCAAATATAAACATCGTTTGAAATCACATTTGACCTCGAATTTTCACGTACCGAGAAATCGGTAG
- Protein Sequence
- MNYSCKCGRKYTQKCSLDRHVKYECASKFVLRYKQTAKQHTGEATEPPDPKKFPCEKCGKVYKWKESLLKHRRVECGKTPQFACLVCANRFMHKHHLMKHLASIHQISLINENDPHVCSKCGKAYFAKTSLWRHRRVECGRTPQFACTTCGLKFMHKHHLLCHLQSNSHWTEVARGNRRAGRTVTSTARREGGLLRRGQDNRFPCQKCGRSYRNKGSLKRHLQDECGKEPKYICHICEKGFKQKANFQRHNSTMHSRPRSSSWNPRSSVPKPYPCYRCERSYTNKSTLNRHLREECGILPQNVCSFCQKAFKQRSNYQRHVWTVHGCLNISDYYKRLGRHFCSTCGKEYRWMQSLVRHEREECGKAPQHRCPVCGLGIRHKWMLKKHLIKYGHCDYHRRYRGRYACDVCGKEFTWKPSLTRHKREACGKEPKFSCPICFKKHRRRSQLKEHLQWVHKWRYYQYYVQTPFTCDNCGKQYKWRESLSLHKRMECGIEPRFTCDFCGHSHVDDQSEYGSRFPCTICGKIYTRKSSRYTHQRLCGKEPRFSCLLCGKLFKYKHRLKSHLTSNFHVPRNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -