Cnol015908.1
Basic Information
- Insect
- Campoplex nolae
- Gene Symbol
- -
- Assembly
- GCA_037893425.1
- Location
- JBBLXU010004289.1:404409-406508[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.042 3.5 8.3 0.6 2 23 155 176 154 176 0.97 2 14 6e-05 0.005 17.2 1.5 2 23 188 209 188 209 0.98 3 14 5.4e-05 0.0045 17.4 2.0 2 23 216 237 215 237 0.97 4 14 0.0007 0.059 13.9 1.1 3 23 299 319 297 319 0.95 5 14 9.6e-06 0.0008 19.8 0.6 1 23 358 380 358 380 0.97 6 14 8.9e-07 7.5e-05 23.0 1.8 1 23 386 408 386 408 0.96 7 14 3.4e-05 0.0028 18.0 0.6 1 23 414 436 414 436 0.98 8 14 3.4e-05 0.0029 18.0 5.3 1 23 442 464 442 464 0.97 9 14 8.7e-08 7.3e-06 26.2 1.0 1 23 469 491 469 491 0.97 10 14 9.6e-05 0.008 16.6 1.0 1 23 497 519 497 519 0.97 11 14 3.3e-07 2.8e-05 24.4 3.8 1 23 525 547 525 547 0.96 12 14 2.6e-05 0.0022 18.4 1.3 1 23 553 575 553 575 0.98 13 14 1.1e-05 0.0009 19.6 1.6 1 20 581 600 581 603 0.92 14 14 0.44 37 5.1 0.3 5 19 613 627 612 632 0.91
Sequence Information
- Coding Sequence
- ATGGATGCCCTATCTTCGAGCAGTCAGGTTATGgATGAAAACATTGTCGGGGTGGAGCTTAAGGAAGAAACGGATGGGAGATTCAGTCAAACCTACATCGAGGATATCTGTCCTGGAACATTCGGCAAGGTTTTCCTACCAATCGACAGCCATGAAGTGGATTTCACGGATGAAATGGTCAAGCTGGAGCTAGAGAGCCAATCGGGAGAACATCATATCTGGGCAGCTCAATTAGCAACGACGACTCTGTGCGAACAGGACGACTGCGGAATCCATAGAAATTCAGATGAGAACGCAGACGAGTGCGAAGCAAAATCTGTAGAACCCGAAGACACTGAGAAAGAGGACGAGGACCAAAATACCAGAGAAGAGGAGCTCGAGGAAGTGACTAATCATCGAGATGAGCAAGAGATCAACAGGCCGGACGAGGAGCCTTGCGTCAACTCCAAGTTTTACAAGATTCAATGTACCGTTTGTAAAAAGTGGTTTTTGAACAACGATTCAATGATAACGCATTTGCGGAGCCACTGCGGTGGCGGAAATCTCCAAAACGGTGGTGAACAATGCCAAGTTTGCGAGCAAAACTTTAACGACAGTACGAGTTTGCACGCTCACATGTTAACCCACGTAGGCATGAATCCGGTCGAGTGCAACGTTTGTCAAAAGAGATTCGCGTACAAATGGTGCCTGAGAAATCACGTGCAAACCCACGTTGTAACAAAatctttcgagaatttttctccgACCGGAAGTAATCTTGTGCTCGTTAATACCGAGCCAGCGAACCTTGGTTTACCGATTACCGGGGCTAGTTATACTTTCGAGAGAATCTCCGAGGAGGAAAGGCGCAAGGAGACTAAATCGGAgagcgaaatttcgaaaaacggaCTTGATTGCGACGTGTGCAAATTGCGTTTTAAAGACAGAGAAAGCTTTAATCGACACTCTCTGTCGCACATGAGCCAAGGAACAGCTTACAAATACGATATTTTCAGTGGAACTCTTCGCGAAAGCCCGAAACCAGAAATGGCTGATTCACGAGCAGCTCAAACGAGCTCCATCACTAAACAATTCAAATGTACACTTTGCGAAAGATCTTTCGGTCAACGTACAGCTCTCAACAATCACATGCTCGCTCACAGCGGTGAAAAACCACACGCGTGTAATATTTGCGAGAAAACGTACAAGCGGAAATCCGAATTGATAAGACACACGATGGTACACACAGGCGAACGACCCTACGAGTGCAAAGAGTGCCTCATGACTTTTCGGGAAAAAGCTAAATTGAATTCTCACATGCTCGTACACACCGGCGAAAAGCCTCACGAGTGTTACATTTGTCACAAAGCTTGCGCTCGAAAATCCGACCTCAACAGTCACATGCTTTCTCACACCGGTGGACAATACGACTGTAAAGTTTGCGACAAAATATTTACCCGTAAATCCGATCTCAATAGACACACTCTCATTCATACCGGGGAAAAACCGTTCGCTTGCGAACACTGCGACATGGCTTTTCGCGAGAGAACTCGCTTGAATTCCCATATGCTCGTTCATACCGGTGACAAAAGACACGCGTGTCATATCTGCGGTAAAAATTTCAGGGAAAAATCCTCCCTCAAAAAACACATGCTCGTTCACACCGGTGATCGACCCTACGAGTGcttcatttgtaaaaaaacatttactctTAAAACCACTCTAAACAGTCACGTTCTCGTACACTCCGGTGAACGACCCTACGAATGCGACAACTGTCCAAAATCTTTTCGCGAAAAATCCTCACTCAGAAAACACTCCGTTTTTCATAATAACGATCGCGATCGCGAGTCCAACGTTTGCTTTAAAAAGTTCACTCACAAAGCCGATCTTGGCTCACACCCCACCATTGACCATCCATCATcttaa
- Protein Sequence
- MDALSSSSQVMDENIVGVELKEETDGRFSQTYIEDICPGTFGKVFLPIDSHEVDFTDEMVKLELESQSGEHHIWAAQLATTTLCEQDDCGIHRNSDENADECEAKSVEPEDTEKEDEDQNTREEELEEVTNHRDEQEINRPDEEPCVNSKFYKIQCTVCKKWFLNNDSMITHLRSHCGGGNLQNGGEQCQVCEQNFNDSTSLHAHMLTHVGMNPVECNVCQKRFAYKWCLRNHVQTHVVTKSFENFSPTGSNLVLVNTEPANLGLPITGASYTFERISEEERRKETKSESEISKNGLDCDVCKLRFKDRESFNRHSLSHMSQGTAYKYDIFSGTLRESPKPEMADSRAAQTSSITKQFKCTLCERSFGQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFRERTRLNSHMLVHTGDKRHACHICGKNFREKSSLKKHMLVHTGDRPYECFICKKTFTLKTTLNSHVLVHSGERPYECDNCPKSFREKSSLRKHSVFHNNDRDRESNVCFKKFTHKADLGSHPTIDHPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00265916;
- 90% Identity
- iTF_00265916;
- 80% Identity
- -