Ccap008345.1
Basic Information
- Insect
- Campoplex capitator
- Gene Symbol
- -
- Assembly
- GCA_037576405.1
- Location
- JARBWI010000019.1:314535-318566[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 2.4e+02 2.9 0.3 3 21 257 275 257 276 0.86 2 12 0.0026 0.29 12.1 0.2 1 23 282 305 282 305 0.96 3 12 0.00078 0.087 13.7 2.3 2 23 318 340 317 340 0.92 4 12 0.12 14 6.8 1.6 3 23 346 366 346 366 0.96 5 12 8.2e-08 9.1e-06 26.2 1.5 2 23 405 426 404 426 0.97 6 12 0.0059 0.66 10.9 0.4 1 23 431 454 431 454 0.91 7 12 0.15 17 6.5 2.0 2 23 528 549 528 549 0.98 8 12 4.7e-05 0.0052 17.5 2.2 1 23 558 580 558 580 0.95 9 12 6.4e-06 0.00071 20.3 0.9 2 23 588 609 588 609 0.95 10 12 0.022 2.5 9.1 4.1 1 21 615 635 615 636 0.93 11 12 0.095 11 7.1 0.0 1 23 753 776 753 776 0.97 12 12 2.4e-07 2.7e-05 24.8 4.8 1 23 781 804 781 804 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTATCGGAGTGGGATAACTCCTGCAGACTTTGCGCCGAGGAACAAAACGAAATGTTTTCGATATTTGGCGAAGAGGGACTAAGGAGAAAAGTTGCTCACAAACTTCGAGTCTGTTTGCCAGTTATGGTGTATAAAACTGATCCActgccaaaaaaaatatgtcaattTTGCGCAGCTAGGCTCGACGATGTTTACGAATTCAGGGAATACTGCCTGAACGTTTACAAAAGTATGCATCGTAAACTCTCCAGTCttaaacatttgaaaagcGTTCAAATTTACATGGAAGCTCTTAACAATTCACCGGATCCATGTCAAGTACAGCTGTGTAAAGAAAACGCTCGAGCTCCGCCGCCTTTAGTACCGTTGCCGGCATCTTTGTCAATGGTGAAACGAGTCACGACTGATTCGCAATTGGCTCCAAATACTTGTCCAGAGCAATTGACAGAATTTTCATGCgaagttgaaataaaagaggACGCAGATGACGAGAGAATTGAATGCAATTTAACTCACCAAGAAGATGGCTCCGCGAACCATGAAATTGCAGCTCGAGATTTCAACAGCATCGGAGCTGAGGAGTACAATGAAAACGATGTTATCTTCCTTGATAATAGTTTCACGGAAGATAAATCTGATAACGAAACGGAAAATAGAGAGAAGAAGCGGAAGAGTATCCTGGAACAAGTATTGACCGGCAACTTAACGATTGACGATTGCAAAGAACTGACACCAAAAACCAAACTCACTTCACAGTGGTGGTGTTCACCGTGCAACAGTTATTATCGAACCAAAAATAGTTTGATGAAACACGTGCAACTCTACTGTCCACGGAAGTACACCTGTTCCACATGTTCCCTCGCCTTTCAAACGCTTCAAGAGCTGGCTAAGCACGAAGCGACTGATCACTTGAAAGTAACCTTTGACTTTGGGAAAGACGTCGTAGAGTGTCAACAATGCGACCGGGAATTTGTTAGTTCGGAGATGCTCAGGCATCACAGACTTCACGATCATACCGAGGAACCGTGGTGTGCACTCTGCAAcaggGTTTTTCCCACCTTCGAATTATACCACAGTCATAAACAACTCCACGATTTTGGATCAATAATACCTCAAGCAACGATGGATAGTGAATCGAGTCCACAATTGCAAGAATGGtccaatgataaaaaaacggaGTATTTTACGGAAAGTGTCAAATCGCTCACTTGTCCAACGTGTGGCAAGGTCTGCACGCAACAAAGTGCCTTATCAAATCACATGCGTACCCACGAGCCTAAAAAACACAAATGCGAAATATGCGGCCGATCGTTTGGTCTTTTTATACGATTGGCCGCTCACAGACTCAGTGAACATGGCCAACACCCTGTTATGTCTCCGATCGAGGCGAGTGTTGAACAAGAAGAAGCTTTGAATGCTGAGAGGGAAGCGAGAGAGGCTCGTGTAGCAAAAATGCCAATGACGCATGGTCGAAAATCTTCCGAGATTTTGAATGACgacgaaatttcaataaacgAGCTGAGCGACTCGAACCAAAAGCCTCGTGAAAATGCAAATGCACCAAAAAACGTAGCTCGTTGTGGAATTTGTCAACAATGGTTCACCGATCATACCACGATGTTGACTCATCTTCAAACTCATTCGGACAACCTTACGTCCAAGAGTTTTAGTTGCAAACTGTGCAAGAAAACGTTCAAGGAAAAATGGCAATTGAACAGGCACGAGgTATCTCACAAACGAGGCAAAATTGCCAATTCCTGCAAAGTTTGCAGTAAAACATTCAGAGATAAGAGTCAACTGAAAATTCACGAGGCCATACACACGTTGAGCAAAACTTATCACTGCCCAAAGtgcaacaagattttttttaaagaattttcacTAATGACTCATGAATGTACCGGTGTACCGGTATTCAGTAAGAGAAATACAACTATGTCCGGAAAAACGACGCGTAAAGCGTCGTCCACTCCGAGCGGTAATGCCAAAAAACACAAGTTATCTAAAGACCGAGGGAGTTTGAATAATTCAAGATCAAGAAGTTCTCGTTCGCGTGCTGCTTGCGAAGAAAACACCAATtctCGAAATGACACTTTGTTGGTGGATTTGGAAGACAGTACAAAGGCCGAGCTTAATCCTGACGATTCTCCGGGAACGTCAAGGCTGAACTTAGAGCCCGAtgtcgaaataaatgaactgGAGAGCCTTCCAACACCGGTTAAAAGGACACTTATTAAGTCTGCTGGCGGATATCGTTGCGGTGTTTGCCAGTCACCGTTCGTACTGCGTGATCTGGCTGTCGCCCATCTCCGTTCAGCTCATCCAATGATGCCTTATCAATGTCCATATTGCAAAAAGCGCTTTATTAACCAATACAACTTTACCCATCATATAAAAACCGATCATCCGAACGAATCGGAAAATTGA
- Protein Sequence
- MAVSEWDNSCRLCAEEQNEMFSIFGEEGLRRKVAHKLRVCLPVMVYKTDPLPKKICQFCAARLDDVYEFREYCLNVYKSMHRKLSSLKHLKSVQIYMEALNNSPDPCQVQLCKENARAPPPLVPLPASLSMVKRVTTDSQLAPNTCPEQLTEFSCEVEIKEDADDERIECNLTHQEDGSANHEIAARDFNSIGAEEYNENDVIFLDNSFTEDKSDNETENREKKRKSILEQVLTGNLTIDDCKELTPKTKLTSQWWCSPCNSYYRTKNSLMKHVQLYCPRKYTCSTCSLAFQTLQELAKHEATDHLKVTFDFGKDVVECQQCDREFVSSEMLRHHRLHDHTEEPWCALCNRVFPTFELYHSHKQLHDFGSIIPQATMDSESSPQLQEWSNDKKTEYFTESVKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHGQHPVMSPIEASVEQEEALNAEREAREARVAKMPMTHGRKSSEILNDDEISINELSDSNQKPRENANAPKNVARCGICQQWFTDHTTMLTHLQTHSDNLTSKSFSCKLCKKTFKEKWQLNRHEVSHKRGKIANSCKVCSKTFRDKSQLKIHEAIHTLSKTYHCPKCNKIFFKEFSLMTHECTGVPVFSKRNTTMSGKTTRKASSTPSGNAKKHKLSKDRGSLNNSRSRSSRSRAACEENTNSRNDTLLVDLEDSTKAELNPDDSPGTSRLNLEPDVEINELESLPTPVKRTLIKSAGGYRCGVCQSPFVLRDLAVAHLRSAHPMMPYQCPYCKKRFINQYNFTHHIKTDHPNESEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299526;
- 90% Identity
- iTF_00266698;
- 80% Identity
- -