Ccap006403.1
Basic Information
- Insect
- Campoplex capitator
- Gene Symbol
- -
- Assembly
- GCA_037576405.1
- Location
- JARBWI010000012.1:341509-342759[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00013 0.015 16.1 0.8 1 23 143 165 143 165 0.97 2 9 0.00014 0.015 16.1 4.6 1 23 171 193 171 193 0.95 3 9 0.0012 0.14 13.1 0.2 1 23 198 221 198 221 0.97 4 9 0.00014 0.016 16.0 4.1 1 23 227 249 227 249 0.98 5 9 0.002 0.23 12.4 0.1 1 23 255 278 255 278 0.95 6 9 0.00032 0.036 14.9 0.8 1 23 289 311 289 311 0.96 7 9 3e-06 0.00033 21.3 1.5 1 23 315 337 315 337 0.95 8 9 4.7e-06 0.00052 20.7 0.4 1 23 343 365 343 365 0.98 9 9 6e-06 0.00067 20.3 1.4 1 23 371 393 371 393 0.98
Sequence Information
- Coding Sequence
- ATGGACGATTTCTTTCGAATACCAAAATCTCTGTGCTACTTCATGGTGAAGAAACCACTGAATCGAGGAGATAAAGTGTTGGACGGAGAATTGAGGAGTAGAGAAAATTGGGCGGAAAGTGACGTTGgatcgagaaaaaaggaagagtCATTGATTGAGGAAggatcaaaagaaaatatgatgATGGAAAGGGAcaaggaaaataaatttgaggcagagaaagaagaagatcAGAGCGTGGAAACACACGTTGTTATGCCCGTGGACGAAGAATCATCCagtaaaagtgaaaaagcGACGTTTCAAAGATCATGCggaaagaaaaagttcaaaGATCTCGACGACGTACCTCTGGCTGTTCGCGACAGCGAATCACGGAGGTCAAAGTCAGAAAGAAAGTCCGAGAAGAAACGGGAGTCGGTGACTTACGAGTGTGAAACTTGTAGCCTGAAATTTGCTCGCAAGAGAGAATACACGATTCACATGGTGAATCACAGCACAGTGAGATCGCACAAGTGCGACATTTGCGAGAAAgcattcaaaagaaaatcggAGCTGAAGTGTCACGTTCAGCTTCACAGCGGTGTTAAATACAACTGTGACGAGTGCGACTTCGTGACGTCGAGTAAAGTAGCTGTTAGATATCACGTGAGGCGAGTGCATCAGCGTGATTTTCGTTACAAGTGCGAACAGtgcgaaaaatctttcatgtCTAACTGCGAGCTGAAAGATCATCGAACCAGTCATTCGAGcacaaaaagtttcatttgcGAGATATGCGGCAAGGCTTATCTTCAAAAGACTTATCTCGGTGCTCACAAACGAGCGGTACACGGAGTTGTGCAAAGAGTTTTGATCAAAGATCATCGGTGCAACAtatgcaacaaaaatttcgtctcCGAGTACATTCTTCAAAATCATATCGGCATACACTCTCGTAAATTCTTGTGTCCTCATTGCGGCAAAGAATTTGCCAACAACCAGTCTCTCACGATGCACAATCGTATGCACACCGGTGAACGTCCTTATTCCTGCAAAATGTGCTCTAAATCTTTTGTACGATCGAACGCTCTCGCTGTCCATGAACTAACCCACACTGGCAAAAGACCTTACGTTTGTGATCTCTGCGGCAAGAACTTTACCCAACGGAGTACTATGATGGGacacagaaaaaaacatcCGGGCACGCATCCTCCACCGCCACCAACGCTTTTGAGCAAACTCGACAATTCCATCGGTTCTAAATCctga
- Protein Sequence
- MDDFFRIPKSLCYFMVKKPLNRGDKVLDGELRSRENWAESDVGSRKKEESLIEEGSKENMMMERDKENKFEAEKEEDQSVETHVVMPVDEESSSKSEKATFQRSCGKKKFKDLDDVPLAVRDSESRRSKSERKSEKKRESVTYECETCSLKFARKREYTIHMVNHSTVRSHKCDICEKAFKRKSELKCHVQLHSGVKYNCDECDFVTSSKVAVRYHVRRVHQRDFRYKCEQCEKSFMSNCELKDHRTSHSSTKSFICEICGKAYLQKTYLGAHKRAVHGVVQRVLIKDHRCNICNKNFVSEYILQNHIGIHSRKFLCPHCGKEFANNQSLTMHNRMHTGERPYSCKMCSKSFVRSNALAVHELTHTGKRPYVCDLCGKNFTQRSTMMGHRKKHPGTHPPPPPTLLSKLDNSIGSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266683;
- 90% Identity
- iTF_00266683;
- 80% Identity
- -