Basic Information

Insect: Campoplex capitator
Gene Symbol: prdm10
Assembly: GCA_037576405.1
Location: JARBWI010000322.1:13901361-13906579[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0084 0.93 10.4 0.5 2 23 492 513 491 513 0.95

2 14 4e-08 4.5e-06 27.2 1.3 1 23 547 569 547 569 0.98

3 14 0.003 0.33 11.9 4.0 1 23 577 600 577 600 0.98

4 14 9.7e-05 0.011 16.5 0.8 1 23 617 639 617 639 0.97

5 14 4.9e-06 0.00055 20.6 0.3 2 23 652 673 651 673 0.96

6 14 0.00063 0.07 14.0 3.8 1 23 691 713 691 713 0.97

7 14 0.0063 0.7 10.8 2.1 2 23 722 743 721 743 0.96

8 14 0.0064 0.71 10.8 0.1 1 23 750 772 750 772 0.98

9 14 0.00021 0.023 15.5 1.4 1 23 779 801 779 802 0.95

10 14 0.0032 0.36 11.8 2.8 1 23 807 829 807 829 0.98

11 14 0.0002 0.023 15.5 4.4 1 23 835 858 835 858 0.96

12 14 0.0016 0.18 12.7 1.7 1 23 891 914 891 914 0.97

13 14 0.00013 0.014 16.2 2.0 1 23 936 959 936 959 0.95

14 14 0.0037 0.41 11.6 3.4 3 23 997 1018 997 1018 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0084	0.93	10.4	0.5	2	23	492	513	491	513	0.95
2	14	4e-08	4.5e-06	27.2	1.3	1	23	547	569	547	569	0.98
3	14	0.003	0.33	11.9	4.0	1	23	577	600	577	600	0.98
4	14	9.7e-05	0.011	16.5	0.8	1	23	617	639	617	639	0.97
5	14	4.9e-06	0.00055	20.6	0.3	2	23	652	673	651	673	0.96
6	14	0.00063	0.07	14.0	3.8	1	23	691	713	691	713	0.97
7	14	0.0063	0.7	10.8	2.1	2	23	722	743	721	743	0.96
8	14	0.0064	0.71	10.8	0.1	1	23	750	772	750	772	0.98
9	14	0.00021	0.023	15.5	1.4	1	23	779	801	779	802	0.95
10	14	0.0032	0.36	11.8	2.8	1	23	807	829	807	829	0.98
11	14	0.0002	0.023	15.5	4.4	1	23	835	858	835	858	0.96
12	14	0.0016	0.18	12.7	1.7	1	23	891	914	891	914	0.97
13	14	0.00013	0.014	16.2	2.0	1	23	936	959	936	959	0.95
14	14	0.0037	0.41	11.6	3.4	3	23	997	1018	997	1018	0.98

Sequence Information

Coding Sequence: ATGGATTCGAGGGGCCCTCCCGAGGGGGGCCCTGTCGATTCAATCGAGATGTCGATTTTGGACAACAAAACAACAtctgaaatttcggaaaattggCCAACGAATAATCTTCTCGCATCGACTCTCGGCGATCCATCGAGAAAATCCAACAACAACAGGCTCTTGTTTTTAACTGTGGGATATCTGGAGGATCAATCACGCGATTATTCGAGAATGTTTCCGGCGTACGAACAAGTACCATTTTCGCCGCGAGCAGCTTCTCCGCTTTCTGATTTTGAGCACCGTGTCAGTCCTCTGGATCCGAACATGAGTTCGGCGGCTCGTTATTCGCCGACTCCGGTTCCCTTACCACCTCTGCCGTTTCACAATTCGGTGGTGGTTCTCCAGGGTCCGCCGTCGCCGCTCGTCGTTCAGCCTGAAAGCGAAACAAACACCCCGGCCGCTATCAACTTCGCCGCGGATCAAGCGAGAGACGATACCGCAGAACAGAGTCACGTGGTCAACGATTTTGTCGACGCTGCTGACGAGGAGGAACTGGTAGCCGGCGTCGGCGAACAATTGATTTTGATgcaaggaACGACGTCGGAGGAATTGGAAGCTTCGGCAGCGCCTTTGATGCTGGCCAGCATTCCTGGCGCTGAATTTGCTTTGACACGAGATTTTCTGGTGATGCAGGATGATCAAATAAACGTGATGAGTACACTGAGAAATCAGGAAATGAATGAGGAGCCGACGGTCGTTGTGGCAGAGCCGATAAACGGAGATAACGAAACTGACataaatttgtcaatttcTTCGATAATCGAGAACATTCCAAAGGTgcaagaaacgaaaaaagatattGAGAAGATCGAggaatcggagaaaaaaatcgtcagaCGTTCGAGACGCcaaataaatgacaaaaaaactttttcctgCGAACAATGCGATTCCGTTTGTCACAAAACTGGGGAATGCACAATGAACAACGTTCGTACGATCGCTGATCAACCCGTACCTTCCAGAGCCATCGCTACACTTCCAGGCTCTTATTTGTCCATCAATAAACTACCAGgatcaaataattcatccggaaattcaaattttggaGTTTTTGCCAAAAGAAATATTCGCTCGCGAACACAATTCGGTCCGATCGAAGGAATTCTTTGCCCTTACGATGGCACACCTTTTGAAAACTCTTTACCACTGCTCTACGAAACTGAGAAcggagaatttttcaaaatcgacgTTTCCAATGAAAatgcCTCGAATTGGATGCGATTCGTCAGGCCAGCCACCACGTACAAAGAACAAAATCTTGGAATTTGCCAACAGGGCGATGGAATTGTATTTTTGACGACGAGAAATATTCTGCCGAAGGAGGAATTGAGAGCTGGGCCTAATCCCGAGTACGCTGCTCGCAGGAATTTGAAGATTCTCGAAGCTGGAATTAAACACGATAAAGAATTGACCGATTCGAATTCGTGGCCGTGCTTCGAGTGCAATCAACGTTTCTTGACGTCAGCAAAGCTCCAGAAACACCTGACGATTCACGACGATCCAAAAGCCGAACCAAAATCGAGAATCAAACGTAGAAAAATGACGGTGCCGACAAaCAAGCTCTTCAAAGTGGTGGACGGTGAAAATTCGTTGTACACGTGTCCCCACTGTCCAAAGGTATTTCCGCGAAGTTACAGTCTGAAGAGACATTTGTTGATTCATCCAGGAGCTAAATCGCCTCGTTACGAGTGCAACACGTgcggtgaaaattttttgcatcCTCACAATCGAAATCGtcacatgaaaatatttcacggcGATGGAACCAAGGAAAAGGAGAATTCTCGTCAAAATTCAACCGAGTTTAAATGCCCCACGtgtaatttaattttcagcaaATCGAGTTTACTGAATTTGCACTCGTTGTCGCACACGAGCAACGTATTCTCGGATCAAAACGTCGACGATTCTTGTCCCCAGTGCAACGAGACATTCAAAACTCGCGATAATCTTATCCAACACGTTGCCAAACACGGCAGACGCTTACAATCacaaaaatcaacgaaaatcaCACCTCTCGCCTCACACAAATGCAACATGTGCTACAAACGCTTCGCCACCAAAGTGCGATTACAACAGCATTATTTGGTGCACGGTGCCGAGGACCAAAAACCACTGCCATGCGACATTTGCTTTAAACGTTTTATGAACAACTCGGCTCTGTCCTGCCACCTGAAAACTCACAgagAGGACAAACAAATATTCGAATGCCCGATGTGCCGCGAACTATTCAATCAAGTTTTAATGCTCAAAGACCATATCGAAACACATCGAAACGAGGACGAGACGTTCAGCTGTCCTCAATGTCCGAGGACCTTTGTAAAATATTCGGTTATTCGTAAGCACATAAGAGCTCATCATTGCGAACGTAAGCACAAGTGTCAATTTTGCGCCAAGCGTTTTCCCACCGTCGATAAACTGCGAATGCATTTGTTGCGTCATTCCGATCACAGAGAATTTCATTGCGCTAATTgcgaaaaacaattcaaacGAAAGGACAAACTCAAAGAGCACATGACGAGAATGCACGATTCTCAGAGAACAAAACGCGATCAAACGACCCAAAATAATCAGATCAAAAAGTTTGTACCGAAGGTAAATCCAACGGACTACAATCGATTCATCTACAAGTGTCATCAATGCCTGGTCGGTTTCAAAAGACGCGGTATGCTCGTCAATCATTTGGCAAAACGTCATCCCGATGTTTCGCCCGAATCGGTGCCCGAATTGAATTTACCGATTTTGCGACAGACCCGGGATTATTATTGCCAATATTGCGACAAAgttTACAAGAGCAGCAGCAAGAGAAAAGCGCACATAGTGAAAAATCATCCAGGAGCAGCGTTACCGCCGAGCAACCGTCACAAAGAGGCAGATTCCGGAGGTTTGCCAAATTTGAGCTTCAGTCAAACGGTCGGAAGCGTGACGACGACGCCGCAAGGTTGTCAATGGTGTCACAAGCAGTACGCTAGCAAAGCGAAGCTCTTGCAGCATCAGCGTAAAAAACACTCGAGTTTAATGGAGCCAGCGGACAAAGTACCGCGAGCACGAAATCGACCGCCGCGCGAACATCGTACGCAATCGTCGAATATCGTCGAGGCGAATTTTCTCATGAGCGATTATTTGCAGAGCTGTGAAATCGAGGCAGATTTTTTGAAGcctaaaatgatgaaaatatcggCTACGGAGATCGATCTCATCGGCTCCGGGCTTGAATTGTCCGGGCAACAACAGTTTGTTCGCATGCGTGATATACGCTGa
Protein Sequence: MDSRGPPEGGPVDSIEMSILDNKTTSEISENWPTNNLLASTLGDPSRKSNNNRLLFLTVGYLEDQSRDYSRMFPAYEQVPFSPRAASPLSDFEHRVSPLDPNMSSAARYSPTPVPLPPLPFHNSVVVLQGPPSPLVVQPESETNTPAAINFAADQARDDTAEQSHVVNDFVDAADEEELVAGVGEQLILMQGTTSEELEASAAPLMLASIPGAEFALTRDFLVMQDDQINVMSTLRNQEMNEEPTVVVAEPINGDNETDINLSISSIIENIPKVQETKKDIEKIEESEKKIVRRSRRQINDKKTFSCEQCDSVCHKTGECTMNNVRTIADQPVPSRAIATLPGSYLSINKLPGSNNSSGNSNFGVFAKRNIRSRTQFGPIEGILCPYDGTPFENSLPLLYETENGEFFKIDVSNENASNWMRFVRPATTYKEQNLGICQQGDGIVFLTTRNILPKEELRAGPNPEYAARRNLKILEAGIKHDKELTDSNSWPCFECNQRFLTSAKLQKHLTIHDDPKAEPKSRIKRRKMTVPTNKLFKVVDGENSLYTCPHCPKVFPRSYSLKRHLLIHPGAKSPRYECNTCGENFLHPHNRNRHMKIFHGDGTKEKENSRQNSTEFKCPTCNLIFSKSSLLNLHSLSHTSNVFSDQNVDDSCPQCNETFKTRDNLIQHVAKHGRRLQSQKSTKITPLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCDICFKRFMNNSALSCHLKTHREDKQIFECPMCRELFNQVLMLKDHIETHRNEDETFSCPQCPRTFVKYSVIRKHIRAHHCERKHKCQFCAKRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHDSQRTKRDQTTQNNQIKKFVPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADSGGLPNLSFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADKVPRARNRPPREHRTQSSNIVEANFLMSDYLQSCEIEADFLKPKMMKISATEIDLIGSGLELSGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057116;
90% Identity: iTF_00266664;
80% Identity: -