Basic Information

Insect: Camponotus floridanus
Gene Symbol: -
Assembly: GCA_003227725.1
Location: NW:2474936-2493353[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0033 0.26 11.3 1.8 1 21 211 231 211 232 0.95

2 18 0.0031 0.25 11.3 2.4 2 23 250 272 249 272 0.91

3 18 6.1 4.9e+02 1.0 0.8 1 13 555 567 555 572 0.81

4 18 0.018 1.5 8.9 4.1 1 23 648 671 648 671 0.93

5 18 0.28 23 5.2 0.8 5 23 678 697 677 697 0.94

6 18 0.28 22 5.2 1.6 2 23 703 724 702 724 0.96

7 18 0.00018 0.014 15.2 0.3 1 20 751 770 751 772 0.96

8 18 7.1e-06 0.00057 19.7 1.8 1 22 916 937 916 937 0.96

9 18 2.1e-05 0.0017 18.2 0.0 3 23 945 966 943 966 0.92

10 18 0.12 9.8 6.3 5.6 1 23 976 999 976 999 0.94

11 18 0.24 19 5.4 0.5 3 20 1025 1042 1024 1044 0.90

12 18 0.36 29 4.8 1.9 1 23 1051 1074 1051 1074 0.90

13 18 0.0037 0.29 11.1 4.9 1 23 1085 1108 1085 1108 0.92

14 18 0.023 1.8 8.6 0.3 1 20 1153 1172 1153 1174 0.95

15 18 0.15 12 6.0 5.0 1 23 1181 1204 1181 1204 0.94

16 18 0.11 8.9 6.5 0.5 1 23 1283 1306 1283 1306 0.94

17 18 0.14 11 6.1 0.8 1 23 1624 1647 1624 1647 0.96

18 18 0.46 37 4.5 3.4 2 23 1671 1693 1670 1693 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0033	0.26	11.3	1.8	1	21	211	231	211	232	0.95
2	18	0.0031	0.25	11.3	2.4	2	23	250	272	249	272	0.91
3	18	6.1	4.9e+02	1.0	0.8	1	13	555	567	555	572	0.81
4	18	0.018	1.5	8.9	4.1	1	23	648	671	648	671	0.93
5	18	0.28	23	5.2	0.8	5	23	678	697	677	697	0.94
6	18	0.28	22	5.2	1.6	2	23	703	724	702	724	0.96
7	18	0.00018	0.014	15.2	0.3	1	20	751	770	751	772	0.96
8	18	7.1e-06	0.00057	19.7	1.8	1	22	916	937	916	937	0.96
9	18	2.1e-05	0.0017	18.2	0.0	3	23	945	966	943	966	0.92
10	18	0.12	9.8	6.3	5.6	1	23	976	999	976	999	0.94
11	18	0.24	19	5.4	0.5	3	20	1025	1042	1024	1044	0.90
12	18	0.36	29	4.8	1.9	1	23	1051	1074	1051	1074	0.90
13	18	0.0037	0.29	11.1	4.9	1	23	1085	1108	1085	1108	0.92
14	18	0.023	1.8	8.6	0.3	1	20	1153	1172	1153	1174	0.95
15	18	0.15	12	6.0	5.0	1	23	1181	1204	1181	1204	0.94
16	18	0.11	8.9	6.5	0.5	1	23	1283	1306	1283	1306	0.94
17	18	0.14	11	6.1	0.8	1	23	1624	1647	1624	1647	0.96
18	18	0.46	37	4.5	3.4	2	23	1671	1693	1670	1693	0.95

Sequence Information

Coding Sequence: ATGGCTAGAGTTCTGTTATACGAGAGAGTACTGGATGCTGTACTCACAAATCCATCAcgTGATACAGAGATCCAAAATGGAATGAAGATTAAAGAAGAGCCTGATGATACGACACTAAATACTGGCACGACGGAGACATTagttagaaatttttatctgaaaaatgatacgttaattagaaattctaatataatcaaTCATGACAAAGTATCATTACCAGAAAACGATGTTTTGcacaaaatcataaataatgaagaaaataaacaaatatccAATGGTCATTCAGCATACATAGATAGTGCAgatgaaattttgaatttaaaacgTAAAAGAACGAAAACAGAACAAGCACGCGACAGAACAGAACTTGCACAGAAGAAACAAAAGCGTGCTAATGATTtccaaatttctaaaaatgaaaatatgaatatgttTACGGAAACAACtggaaaattaagaaaatttagaaaaagaagaaaacgaCAAAGCATTACATCGGATTCTAGAACCAAAAAGCAACACACAGCTCGACCatcaaaaagaaaagtttCCACTGAATGTAACATATGTTTTAGGAAGTTTTCTTGTTTTCGATATTGTGAAACtcataaacaatattatattggaaattataaatgcacaaaatgtaaaaagccTTATATAACACTCAAGGAACTTCATTTGCATACCATGAAATGTAACAATGTAACACATAATCAGTCAATGGTCAATAATCCCTCAAGCATATATTGTAACTTTTGCAATCGTgtttttagaaagaaaatacTTCTACAATCACACTTGTTTCATGTgcataatgaattaatatattccaaTAACATAACTGAATGTGAAAATGCAAAATctaagaatgaaaatatactttgtgaaaataatactTTGACTGATGCACATGAAAAGTCACTATGTGCAAATAATCTTGTTAAATCAAAgaaacgaaatattaattttataaataataatagttccGGGAGCGATGATGATATGACAAAGACTGAGAGCTTAAAAACTGAAGAATCTTTCAGTGATGGAATGTCACCTACGAAAAAACTACGGCAACCAACATTAACGGAATATCTTGAGCTCTGCAAAAGAAAACGCGATGTTAGTGCCagtctaaataaatttaacattatgaaagataatttttcgtcTACTTTATTTCATGGTGAAAAAacagcaaaaaattttaaaccgAAGTTTTCAGAAATGTGTAATGAACAAGTTGATTCTTTATCTACAAAATCAAGTAATTCAGGACAAACGGCATATTCTACTTTGGagcaagataaaaatatccaaaGCCACGAAATGCCCAAAAAGccatttgtaaaattacatgCGGATGTTGAAATGATGAAATCTTTTTTGGAAAAACTTCCAAATATAACtattgaagataaagtaatcaAAGATCAAAAGAATGATATTGCTTCATATTATCATGAAGTGCCATATAGTCTACGGTCTCTAAGAACTATATCTTCCATGGAAACAATTTCAAATTCAAGGAAGAGGAACAGCAAAGACATACTTAAGAAATCTCAACCTAACGCAGAACGTACTAGTACTAGAACGGAACATAATGAGACTAATTCAAGTAAAACAGATTCCAACTTTTGGGAACCTATTATGGTTCGTTTTAAGTGTAAGGAttgtagaattattttaacaagatGCGATGAGAAGATAAGAAATTGTCATCAAATTCCTTCAGTTAAAATGACGTCTAATGAAAACATTTCTGTTCCTTCTCAAAGCAATTCTATgttatttcaagaaaatgatatacaaaataaaatgttgaataaaGTGTTGAAAAACTTAGAAGTTTCTCTGGAACGTTTAACAACTGTTTCAGCTGTAGATATTACAAAAATGAAGACAGTGTCAGACATCGAAAAATGCAATAATGattcttttttatgtaaagtttgtaagaaaagtttttcttcaaaattggACAAGCATATGCACATTAAGTCATCTCATGTAGGATATATGTCAAGTATATGCGACGCACGATTTAAGCTGAAACATAAATTACTTCAACATTATTTGAGTGAACATCTACTTAAACAAAATCAATGTTGCGtttgttatatattcttatctaATTATGTAGAGTTGAGGCGACACTTAACTCTTCATTGTTTGAAATATGTTCAAAGAGAAAATGATCAATGTCCAATAGATATTGAGATAAAATGCAGCtcgataaaaaacaattataaatgtcTTCAATGTGATCAAGCATTCGCAACGCAGTCTACTTTGATGATGCATCAAAGTTTTTGTATACTACAAGAAGAAATGATCGAAAATCAAAAAGATTCCATACAGAAGATAAATGCGTTCCCAAAAATTATTCTCAAGATGCAGCGCAGCAAGAATACCAATGGACTTAAAGTtatacatgataaaaatactCATTTTGATGAATGCTCAAGTAAAAACTCTATAGAAATGACAAACAAACATCAGAAATCACtaattaatgaagaaaattcaAAAGTTATTGAAGAAGATTCAGAAGTTAATGAAGagccaaaaattaatgaagataAACAAAAATCTTCTGTTAATAATAACTTAGCTACAAAGGAAATGGAGATTATCGACGAATCACGGAACTCTGAAAAACTTTTAGAAAATAGTAATTCGATTAGTAACCAAGATACTGCGAGTGCGCAATTGGAAGTCATTAAAccaaaaattaacatttttcctTGTAATATATGTGGAAAACAATTTCATACCCTTAAAAATTTGCAGCATCACATACGCAGTTTTAGTAATACTACTGATATCTGTCCGATATGTGGCACTGCATTCAGTTCAAAACGTCTCCTACAATCGCATATTACTGCGGCACATGTACCACAAATTTCAAAAACCTACAGTTTTCATTGTATGTTTTGTAATCAaggtttttttaaaaaatatgaactgCGATCTCATATATTACATCTGCATGGCCAACAAATACTTGACACAATCACGCACGATTCTCGCGCGAATCAAGAGAAATCAGATACTCAACCCGCaatgtgtaatatatgtaatttagtaTTTGAGACGCATAACCGTTACACAGAacacaaaatgtattattacaagAATCATACATTCTTATGCTCGCTCTGTGGACAAAATTTTCAGGGAATGTATATGTTGAATCATCATAACAAACTCACACATTATTCAGAAGATAAACgtaaatcttataattatatttgcgaaATATGCGGCGAAGGATTTAGCCATGAATCTCATTTTCATTCGCACAATATGCATGTCCatttaaatgaagaaaatttgaGTGAGATTGCAAAAGAATCTGAAGGAAAAAGCCAATTTGATCACACATCCGATATTCAAGAACAAATTAGAGATTCAACaaatcaaaaagaaattgaacaaTTGCCTAATGAATACATTTGTCATATTTGTCAACTAAAATGTATAGATGCTGATGATATGGAAAAGCATACAGCACTTTACTCTAATGACggcaattttaaatgcgatagATGCAAAAGGCAATGTAAAACACTTGATCTACTTTATCAACATAGAACATTAACTCACATTTGCCGTGATATTTATAATGGATATGTTTGCTGCATTTGCGGCGAAGTTTTggaaacaattatttcattgGAATGTcacaaaaaacattttcattcGAACGATATTGCATTCAAATGCAATAATGCCGATGACTCTAAGAATTGTAAACAGACATTACCTTCGAATActgtaagtaaaataataacatatcaACTTGAATCTAACGATACACATAATACAGCAAAATGCAGATATAATTGTTTGTTCTGCGACATGAAATTTTTCTCTGCTAATGCTATCCAGACACATATAATTCAAACGCATATTGAAGATTTATTTGCCAAACGCACTGGTATAAAACCTACACCTTCCATTATTGAAAGCGACAATATTTGCGAACCGTCCGTTCAACAGTTAGTTGAAGCTGATCAAACATCAGCGATAGCAACTACAACATCAACAGTAATTGCAACATCAGCAACTACAATAGCAACATCAGCAGTAGCAACTACAACATCAGCAGTAGCAACTACAACATCAGCAGTAGCAACTACATCAGCAGTAGCAACTACAACATCAGCAGTAGCAACTACAACATCAGCAGTAGCAACTACAACATCAGCAGTAGCAACTACAACATCAGCAATAGCAACTACAACATCAGCAGTAGCAACTATAACATTAGCAGTAGCAACTACATCAACAACAGCAACTACAACATCGTCAACAATTGTAACCTCAACAGTAGCAACTACAAGGTCAACCTCAGTAATAGTCGCTACAACATCAACATCAGCAACATCGGTAGCAACATTTGAAGATAACCCAGCGCTATTTCTTCAAGATGAATTcccaaataatatttcaaataaaaatggaataaaagGTAAAACTAATATCGAATTACCAAATCAGATTACGCTTTCGAAAAATAACAAAACTATACCGGACATTTCTACGATACCATCTATTAGATTACCAGCTAATATAACAAACTCTATAGCTATTGCATTAACTAATTATTTTCCTTATAAACCTTCCTTAATTCCTCTATCCATTGAATCAGAATCATCTAATAACCCTtcaaaaagttatacaaattctataaaatctgGGTCGATCAATGAATTTGAAACCAACTCAACATCgtcatcaaataaatttatccatAATAACTCTGGATTATTCGAAGCTATGTTTCTTGTACCACAAGGTTCGAAAAGCAATGAAATTACAAATCAAAACCCAATGAGCACTTACAATCCGAATTCTAGTTATACGTGTCCTTTATGTTCATTAGAATATCCATCTTTGATGTTTTTTCATGCCCATCTGAAATATGCTCATGTAGATTCTATTCgaactaatataattaaccTATTTAATCAATCAGAGATTCAAGAGATTTCcctaataaaatgtttattatgtcTATGTACATTTactgatgaaaataaatataaaagtcatttgaaaaattctcaTACTCGTACAGGTGTCTCGAACTCTCAgaatatgagaaaaatagaTGATAAGGAGAAAAACACAACAAAAAACACTCCTGAAATTATTACTCtggatgatgatgatgacgaCAATGTCGAGAATAATTTGAATCAATGTACAACCAAATCTACAACCACGCTCGTTCATGAAAAACAGGATGAAAAACAGGATGAAAAAATTGGTAAATTGAGAGTGAAACCTTTTGCGAAGATTATGGAAAATTTATCTATAGAGTATGCATCGAAACACCCGTCTAAAAAAGTCTctcattttacataa
Protein Sequence: MARVLLYERVLDAVLTNPSRDTEIQNGMKIKEEPDDTTLNTGTTETLVRNFYLKNDTLIRNSNIINHDKVSLPENDVLHKIINNEENKQISNGHSAYIDSADEILNLKRKRTKTEQARDRTELAQKKQKRANDFQISKNENMNMFTETTGKLRKFRKRRKRQSITSDSRTKKQHTARPSKRKVSTECNICFRKFSCFRYCETHKQYYIGNYKCTKCKKPYITLKELHLHTMKCNNVTHNQSMVNNPSSIYCNFCNRVFRKKILLQSHLFHVHNELIYSNNITECENAKSKNENILCENNTLTDAHEKSLCANNLVKSKKRNINFINNNSSGSDDDMTKTESLKTEESFSDGMSPTKKLRQPTLTEYLELCKRKRDVSASLNKFNIMKDNFSSTLFHGEKTAKNFKPKFSEMCNEQVDSLSTKSSNSGQTAYSTLEQDKNIQSHEMPKKPFVKLHADVEMMKSFLEKLPNITIEDKVIKDQKNDIASYYHEVPYSLRSLRTISSMETISNSRKRNSKDILKKSQPNAERTSTRTEHNETNSSKTDSNFWEPIMVRFKCKDCRIILTRCDEKIRNCHQIPSVKMTSNENISVPSQSNSMLFQENDIQNKMLNKVLKNLEVSLERLTTVSAVDITKMKTVSDIEKCNNDSFLCKVCKKSFSSKLDKHMHIKSSHVGYMSSICDARFKLKHKLLQHYLSEHLLKQNQCCVCYIFLSNYVELRRHLTLHCLKYVQRENDQCPIDIEIKCSSIKNNYKCLQCDQAFATQSTLMMHQSFCILQEEMIENQKDSIQKINAFPKIILKMQRSKNTNGLKVIHDKNTHFDECSSKNSIEMTNKHQKSLINEENSKVIEEDSEVNEEPKINEDKQKSSVNNNLATKEMEIIDESRNSEKLLENSNSISNQDTASAQLEVIKPKINIFPCNICGKQFHTLKNLQHHIRSFSNTTDICPICGTAFSSKRLLQSHITAAHVPQISKTYSFHCMFCNQGFFKKYELRSHILHLHGQQILDTITHDSRANQEKSDTQPAMCNICNLVFETHNRYTEHKMYYYKNHTFLCSLCGQNFQGMYMLNHHNKLTHYSEDKRKSYNYICEICGEGFSHESHFHSHNMHVHLNEENLSEIAKESEGKSQFDHTSDIQEQIRDSTNQKEIEQLPNEYICHICQLKCIDADDMEKHTALYSNDGNFKCDRCKRQCKTLDLLYQHRTLTHICRDIYNGYVCCICGEVLETIISLECHKKHFHSNDIAFKCNNADDSKNCKQTLPSNTVSKIITYQLESNDTHNTAKCRYNCLFCDMKFFSANAIQTHIIQTHIEDLFAKRTGIKPTPSIIESDNICEPSVQQLVEADQTSAIATTTSTVIATSATTIATSAVATTTSAVATTTSAVATTSAVATTTSAVATTTSAVATTTSAVATTTSAIATTTSAVATITLAVATTSTTATTTSSTIVTSTVATTRSTSVIVATTSTSATSVATFEDNPALFLQDEFPNNISNKNGIKGKTNIELPNQITLSKNNKTIPDISTIPSIRLPANITNSIAIALTNYFPYKPSLIPLSIESESSNNPSKSYTNSIKSGSINEFETNSTSSSNKFIHNNSGLFEAMFLVPQGSKSNEITNQNPMSTYNPNSSYTCPLCSLEYPSLMFFHAHLKYAHVDSIRTNIINLFNQSEIQEISLIKCLLCLCTFTDENKYKSHLKNSHTRTGVSNSQNMRKIDDKEKNTTKNTPEIITLDDDDDDNVENNLNQCTTKSTTTLVHEKQDEKQDEKIGKLRVKPFAKIMENLSIEYASKHPSKKVSHFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -