Basic Information

Insect: Camponotus floridanus
Gene Symbol: -
Assembly: GCA_003227725.1
Location: NW:167321-177704[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00097 0.077 12.9 1.0 1 23 118 141 118 141 0.90

2 12 0.0046 0.37 10.8 4.7 2 23 264 286 264 286 0.91

3 12 3.7 2.9e+02 1.7 7.6 3 23 434 455 433 455 0.95

4 12 0.25 20 5.3 2.9 1 23 504 527 504 527 0.93

5 12 3.2e-05 0.0026 17.6 0.3 2 23 575 597 574 597 0.96

6 12 0.00035 0.028 14.3 0.1 3 23 621 642 619 642 0.94

7 12 0.0048 0.39 10.7 3.6 2 23 703 725 702 725 0.96

8 12 0.065 5.2 7.2 4.2 3 23 740 761 738 761 0.92

9 12 6.2e-05 0.005 16.7 0.1 2 23 808 830 808 830 0.94

10 12 6.8 5.5e+02 0.8 1.2 1 23 909 931 909 931 0.89

11 12 0.048 3.8 7.6 1.2 2 23 942 964 941 964 0.93

12 12 0.0043 0.34 10.9 0.8 1 23 1036 1059 1036 1059 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00097	0.077	12.9	1.0	1	23	118	141	118	141	0.90
2	12	0.0046	0.37	10.8	4.7	2	23	264	286	264	286	0.91
3	12	3.7	2.9e+02	1.7	7.6	3	23	434	455	433	455	0.95
4	12	0.25	20	5.3	2.9	1	23	504	527	504	527	0.93
5	12	3.2e-05	0.0026	17.6	0.3	2	23	575	597	574	597	0.96
6	12	0.00035	0.028	14.3	0.1	3	23	621	642	619	642	0.94
7	12	0.0048	0.39	10.7	3.6	2	23	703	725	702	725	0.96
8	12	0.065	5.2	7.2	4.2	3	23	740	761	738	761	0.92
9	12	6.2e-05	0.005	16.7	0.1	2	23	808	830	808	830	0.94
10	12	6.8	5.5e+02	0.8	1.2	1	23	909	931	909	931	0.89
11	12	0.048	3.8	7.6	1.2	2	23	942	964	941	964	0.93
12	12	0.0043	0.34	10.9	0.8	1	23	1036	1059	1036	1059	0.98

Sequence Information

Coding Sequence: ATGTCATCGAGCATGACATCGTCGCACGagccgacgacgacgatggccGAGGCGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAGCGCGACACGTGGAAGCGCGTCCGCGGCGATTCCGCCGATCTCGGTGTCGGTATCAAAAAACGTCGGAAGCAAACAACACCGGTAAGATTTTCGTCCAGTATAGCGACAGGCGCGCATGAGGATGGGTGCGAGGACGAGCGCGAGGACGAGGATAGCGAAGGTAAGCCGTCATCGCGATCGCCGTTGCCGGGCAACGAGCATCACCATCGTCAACACCACTATCATCATCAGCCGTCGTCGAAAGACGAGAATCTCAACAACGAGTTTCGTTGCCACTTCTGCGGCCGGTTCTTCGATAGCGACGAGACGCTCAACGTCCACGTGGACGGCGAACACGGTGGCGCGAGACAGGCGACACCGAGCGTCACCGTCAAGGTAGAACCGACGCAGCAGCTGGATCAGACTAATGATGGTCCCGTTAGCCTCTTAAGCGTCAAGAACTTCGCGACTACCTGGCTGGCGTCCGGCAGCCAGCAACACGTGCAATCGCAGACGCAGATGCAATCGCAAGGCGAGGACTCGTGGTCAGGCGGTCCGGTCAATCAGATCGTCACGATGACTAATCACTTGCAGGCGCTCTCGGGTTTTCCTGGCGCCCTCGCGCAGTATCTACCCTTGCCGAGTTTTCCCCTACCCGATCCCCAGCAAGTCCCGAGATCCTCCCTCGGTCCGATGCCGGTCAAGATTTTTAATCCGGACGCGTACTGCGATATGTGCAACAAGGAGTTCTGCAACAAGTATTTCCTGAAGACGCACAAGGCGAATAAACACGGGATCTATGTGGATTCGCCGGCGCCGAGCACGGTTACGGATGCCGCTAATGTATTCGGCGCCGCGAACTTTCCTACAGGTAATACGAGCGTGAAGCTGGAACCACCGACGACGCCGCCGCAGAAACGTTTTCGCAACGAGGAATCTGCCATAAAAAAGCAGAAGCAAAAAAATGAATCGTTGATGGATCAGCAATCGGACAGCCAACAGATCTCTCTGTCGCAGAACGAGGAGGATCGAGAGACTCCGCGCGACTCCGCGCGACTCAGTCCCAGCGGCATGGAGGCGCTTCTTAAGCAGGAATACGGCATCGAACAGGAAGACGCTACCTTTATGCCGGCTCCTAGACACCTTTCGCCCCAGTCCATTCAACAGGCGCGCGATTCCGGCTTCAGCGCCGATCTTCTGCGTCGTCTGGGCGTCATAAATCCCGACGCGTTTTGCGAAATCTGTTGCAAGGAATACTGTAACAAGTACTTCCTGCGCACGCATAAGATGAAACGGCATGGTATTGTGGTGCAAGACAACGAGAGGTCACCTGGTAATCCTGGCACGACTGTCGCCACGTGGCACCAAGTGCAGACTAGTCCGCTGAATCTGATCGTGGCCGATTCCATCGCCGCAGAGTCCAACGAGCGTATCGGTGAAGAGCACGAGTGCAAATCTTGCGGGATCCGCTTCCAAACGATCGGTCTTTATCAGGCGCACTGCAGGAAGATACACGAGGGCGAAGAACGTGGCACGCCGAAGCAAGAATATGACCTAGAAAGTTCCGATCAGCGCACCGATTCGATCTCGGAGGATCTTCAAAAGCTGCAGACAATGATCATGCAACTGAATGGCTTGGATTCCGATAAAGGATTATCCTGCGGCGTCTGTGGTAAAGAGTGCGACTCGAGGTCGGCTCTGCGCGTTCATATGGCGACCGAACATGGTGTCGTCAATGATGAAATTTCGTCGCCGCAGGAAACATCGCCAACGCAGATCGTTTCGACTATCTTCTGCACTTTGTGCGAGAAGGATTACCCCAGCCAGGAGGCTCTGAGGAGACACATCAACGAGGAACATCAACCTGTTGTGTCCAGCGTTATCACACCGCCGACACTTCCGCCGACGATAATCTCCTCTCCCGCCAGCTCGACACCAACTAATCAGGCTCTAAGCAATCAAACGATGACGAtaacgacgacggcgacgacgacgacgacgacggacAAGAAGATGACGTCATTGACGCCGACATCCAGCTACTGCGAAATATGCAACAAGGAGCTGTGTAACAAGTATTTTATGAAGACGCACATGCAACGAATGCACGGCATCGAAATTGAAAATGGTGCGCAGATCGGTGGtgttatttgcaatatttgcaACAAAGAGTTGTGCAGCAAATATTTCCTACGCGTTCACAAGCACAATACCCACGGGATCGTCGATGAGAACACGTCGTCGGCATCAACATCGAATAAACAAGAACCTTACGACGCTTCCAGCGCAGAGGATTCGGTATTGAAGCAGGAATTGAGCGATCTTAGTCATAAGTATTTCATTCACTTCACCGAGGTATGTCCGATCTGCAATCGGAGGTTTCGCAGCATCAAGTGGTTGAAAGCCCATTTGATGGGCGATCATGGCAAAGTCGGGATTGATAAATGGCGCGAATTAGAACAGCAATATCAAGAAACGCCCAGAACCAGCGGCAAAAGTGCTGTCGCTCCAGTAAAGAACGTCCAACAAACGTCGAATCTGAAGATTCCCAATGGCTTTGAGATTCAACAAGTCAAGTCGACCGATTGCACCAATCTAGGAAATCAAGTGTTGTCAAATTTCTTTGGTTCTTCGTCCGAGGAACAccagttaaaaaattatcattgcgCCTATTGCAACTTTGCGACCTCCGTGTTGCCGTTACTCTTCTTTCACGAGCGATCACACGTGAGTTTGCAGGAAGGTGACCGGCCGTTGCAGTGTCCGATTTGCTTGCAGGACTTCCATCAACTGGAACTACTTCATCAGCACCTACTCGCTAAGCATCAAATCCCAACTTTGCTATCGCAGTTTCAGTATCCTCTTCTGAATAATTTGAGATCGGACGCTGATGTCAAAGCGAGCGACGCTAAGAACAAAGCCGATCAAGATAAGGACAACCGAGCGGGATGCAGTCCGCagatcgataaaaatattcccgAGCCCGCGAGGAACCAACAGCAGGATGAAACCGCCGTGCAGGTGACTGCTCATGGCGCGTACAAGTGCGCTCAGTGCGGATACGCGACGACGAATCTAAATCGAATCAAGAAACACGTGCGAAAAGATCACAAAATGATCGGCGATCCAACGGAGAGCGTGATCGCCGAACTTAGCAAGACTCTGAAAGACGTGGCGAATAAGCAGAAGGTACCGGCCTGTTTTGCGATGCCGCAGGACATGAATTCGAACCCCGATAAAACCATCATGCAACCGTTCTTGATCGAGGAACAAGATCTGATGCAGGCGGGCGTCGAATCCAGCTCGGCGAAGAGATTCGCGCCAGCTCTGGTCTATTTGCCAGTTAAATCCAGAATCGGCAACGTCTTAACCGCTTCCTTCACTCTCACCCCCGCCtga
Protein Sequence: MSSSMTSSHEPTTTMAEAELDSDGSSCGERDTWKRVRGDSADLGVGIKKRRKQTTPVRFSSSIATGAHEDGCEDEREDEDSEGKPSSRSPLPGNEHHHRQHHYHHQPSSKDENLNNEFRCHFCGRFFDSDETLNVHVDGEHGGARQATPSVTVKVEPTQQLDQTNDGPVSLLSVKNFATTWLASGSQQHVQSQTQMQSQGEDSWSGGPVNQIVTMTNHLQALSGFPGALAQYLPLPSFPLPDPQQVPRSSLGPMPVKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPSTVTDAANVFGAANFPTGNTSVKLEPPTTPPQKRFRNEESAIKKQKQKNESLMDQQSDSQQISLSQNEEDRETPRDSARLSPSGMEALLKQEYGIEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVVQDNERSPGNPGTTVATWHQVQTSPLNLIVADSIAAESNERIGEEHECKSCGIRFQTIGLYQAHCRKIHEGEERGTPKQEYDLESSDQRTDSISEDLQKLQTMIMQLNGLDSDKGLSCGVCGKECDSRSALRVHMATEHGVVNDEISSPQETSPTQIVSTIFCTLCEKDYPSQEALRRHINEEHQPVVSSVITPPTLPPTIISSPASSTPTNQALSNQTMTITTTATTTTTTDKKMTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSASTSNKQEPYDASSAEDSVLKQELSDLSHKYFIHFTEVCPICNRRFRSIKWLKAHLMGDHGKVGIDKWRELEQQYQETPRTSGKSAVAPVKNVQQTSNLKIPNGFEIQQVKSTDCTNLGNQVLSNFFGSSSEEHQLKNYHCAYCNFATSVLPLLFFHERSHVSLQEGDRPLQCPICLQDFHQLELLHQHLLAKHQIPTLLSQFQYPLLNNLRSDADVKASDAKNKADQDKDNRAGCSPQIDKNIPEPARNQQQDETAVQVTAHGAYKCAQCGYATTNLNRIKKHVRKDHKMIGDPTESVIAELSKTLKDVANKQKVPACFAMPQDMNSNPDKTIMQPFLIEEQDLMQAGVESSSAKRFAPALVYLPVKSRIGNVLTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00729606;
90% Identity: iTF_00868350;
80% Identity: -