Cflo010935.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus floridanus
Gene Symbol
-
Assembly
GCA_003227725.1
Location
NW:1635656-1640142[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.3 4.2e+02 1.2 0.2 1 16 50 65 50 67 0.88
2 16 7.8 6.2e+02 0.6 0.4 1 7 108 114 108 116 0.89
3 16 0.013 1 9.4 0.6 1 23 358 381 358 381 0.91
4 16 0.00025 0.02 14.8 1.3 1 23 387 409 387 409 0.98
5 16 0.057 4.5 7.4 5.3 1 23 493 515 493 515 0.93
6 16 0.0027 0.21 11.6 0.4 1 23 522 545 522 545 0.91
7 16 0.00042 0.034 14.1 4.4 1 23 551 573 551 573 0.97
8 16 0.00035 0.028 14.3 2.2 1 23 579 601 579 601 0.99
9 16 1.5e-06 0.00012 21.8 1.2 1 23 607 629 607 629 0.98
10 16 0.0019 0.15 12.0 0.8 1 23 642 665 642 665 0.96
11 16 0.00013 0.01 15.7 4.5 1 23 681 704 681 704 0.96
12 16 0.00056 0.045 13.7 0.9 1 23 712 735 712 735 0.98
13 16 1.7e-05 0.0013 18.5 0.5 1 23 741 763 741 763 0.98
14 16 0.00045 0.036 14.0 6.2 1 23 769 791 769 791 0.98
15 16 4e-06 0.00032 20.4 2.1 1 23 797 820 797 820 0.98
16 16 0.00039 0.031 14.2 0.5 2 23 826 847 825 847 0.97

Sequence Information

Coding Sequence
ATGTCAAATAATTCAATGACATGTCGTTTGTGTGGTATTAAAGAGGAACtcataaatttaaagtatatcTTTGATGAAGCGACTAATTTAGCACAGAAAATAAATGACACATTACCAATCAAGATTTCACAGGAtgattattctaaatatatatgtttggaCTGCTACGAAAAAGTTACCACTCACTATGATTTTATCCAAAAGATTGTGGAAAactcaaaagaaaatattaatatggcAAAGAGTAATTCCTTATTTGAGGTCAATAAAACcgaaaaaatggaaattgcAACAGTCTCTAAACTGTATAAtgatatgatatatacatGCCCAAATTGCAATATAGGTTTAATGATCCTAATAAACAGCAATCCTGATGATTGTAATTATGCATTTCAAATTTCATTGGCCATAGTAGATCAAATGGAGAAATCAATGGAAAGAGATATACAAACCTACGAAGATACAACAGAACTtgttaatacttgtataaaaAGATCAAATACTGAAGATGAGTTGCATGAATCATCATTAAATCATAGTATTGTTACTGATATGTTGAATGACAAAGAACAAAATATCAACAAAATGGATGAAAACTTACCAATACTACAAGAGGACATAAATCATGTTGACACTTGTATTACATCTCAAAAAAGTAATGTATCACCTCAATTGAGCAAAGGTACaaaaagaaaacttaaagaaaatatttcttgtcaAACATCTACTAAATCACAAAAATTAGAAACGCAATTAAATACAACAGATACTGATGTATTGAACAATGATTATGCATGTGTAGATATCTTGATTAAAAACGAGACTTTAAATGATGAAATAGAGGAACGCGTGGAGTGGCTTAGTAatgaaattttcttcaaagaagaaaatagtataatgtatataacagAAACTGAAAATGACCATATTGGAAATGGTACAAAATACGACGATATCGATAATAAGAGCTGTCCAAAAATTGTATGTGACTTATGCGGAGCTCGTTATCTTTCAcagttaaaatatgaatttcacATGGAGAGGCATAAATCAGATAAAATGGATAGATATGTCTGTACAGTATGTGACAAAGAAGCTAGCAACGAAAACTTATTATGGGATCACTATTTCCACACACATAAAAGCTCAATACGATATGCTTGCACACAATGTGGCAAATTGTTTACGAAGAAACCAAGATTAAATGGCCACCAAAAGAGACATAAACACTTTGGTACTAAAGAGATACATTTTGAAATGGGCACGGATGAAATAACCGTCAATCAGGCACAGAAAGCTATTGCGATCGAAATACAAGAACGAGTTGCTACAAATTGTAGTCTCTgtggaaaattaataacagattTAGATCCGGATGCTATTAACGATTTGGCGACATGCGCGGCCTGCGAGGACTCCACTTTATCTCTAATGGTCGATGGAAATGAAATGAAAGTGATCTCACCGCGGCAATATCATTGCTCGAAATGCCCAAAACATTTTGTGCGCAAAGAGAGACTGGAATTCCATGAGATGAGGcataatgaaaatatgaacGAATTTATCTGCAGCACATGTGGCAAGGAATTCAGTGCAGAGAATTCCTTATATGAGCATTATCTCTTTGTACATAAAGGAGCTAGACCGCATATCTGTGAGCAGTGCGGCAAATCATTTCAGCTGAAAGCACGATTGAAAGAACATCATCGCACACATACTGGCGAGAGACCTTACCAATGTGACATATGTGGCTTGCGCTGCATGACCACCAATGCACTTAAACTTCACAGGAAAACTCATTTCTCCCACAATcgttatatttgcaatatatgtGATAAATCCTTTAGCAAAAAGCAGAACATGAATGAGCATTTAGAAAAACACTGGAAAAATGATAAGAATGTATCGCTACCgcaattatttacatgttCGATATGTAGTAAAGATCTGCCAACCTATCGTATGTTGAAGTATCATATGATGGAAACTCATCAAATTGACCGCCAAGATCCCTTATTAACAACACAAAAACCATGGTATGAATGCAACGAATGTCACGAAAAGTTCAAACATCAAATGTCACTCAAGGTGCACAAAGAAAAGGTACACGAGGGCAAGGTGAGCCCGGTATTCCAATGCGATACGTGTAACGCTACTTACAGAATCAAGCAGCTgctaataaatcatattaagaGTAAGCACGGTGGCGAGAAGCGATACAAATGTGCACAATGTGGCAAAGGATTCAATGATACTAAATCCTTATACAATCATATTTTACTACACACTGGTAGGAAACCATTTACTTGTGAATACTGTAACATGAGCTTCAGGCGGAAAGACTCCAGGGATCACCATCGTCGTAAGCATACAGGCGAACAGCCTTACCAATGCCCGGATTGTGGCCAATCGTTTTCTACCTACAACAATCGGTCGAAACATCGCAAGAAGGAACATGGAGAAGGTGAAATTGAATGTCCAGAGTGTGGAGAAAAATGTAACAGTCAACAGGAAATTAGAATTCATCTAAATAAGCATCTCggtgaaaaattgaataaattacaatGTGTATaa
Protein Sequence
MSNNSMTCRLCGIKEELINLKYIFDEATNLAQKINDTLPIKISQDDYSKYICLDCYEKVTTHYDFIQKIVENSKENINMAKSNSLFEVNKTEKMEIATVSKLYNDMIYTCPNCNIGLMILINSNPDDCNYAFQISLAIVDQMEKSMERDIQTYEDTTELVNTCIKRSNTEDELHESSLNHSIVTDMLNDKEQNINKMDENLPILQEDINHVDTCITSQKSNVSPQLSKGTKRKLKENISCQTSTKSQKLETQLNTTDTDVLNNDYACVDILIKNETLNDEIEERVEWLSNEIFFKEENSIMYITETENDHIGNGTKYDDIDNKSCPKIVCDLCGARYLSQLKYEFHMERHKSDKMDRYVCTVCDKEASNENLLWDHYFHTHKSSIRYACTQCGKLFTKKPRLNGHQKRHKHFGTKEIHFEMGTDEITVNQAQKAIAIEIQERVATNCSLCGKLITDLDPDAINDLATCAACEDSTLSLMVDGNEMKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKEFSAENSLYEHYLFVHKGARPHICEQCGKSFQLKARLKEHHRTHTGERPYQCDICGLRCMTTNALKLHRKTHFSHNRYICNICDKSFSKKQNMNEHLEKHWKNDKNVSLPQLFTCSICSKDLPTYRMLKYHMMETHQIDRQDPLLTTQKPWYECNECHEKFKHQMSLKVHKEKVHEGKVSPVFQCDTCNATYRIKQLLINHIKSKHGGEKRYKCAQCGKGFNDTKSLYNHILLHTGRKPFTCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGQSFSTYNNRSKHRKKEHGEGEIECPECGEKCNSQQEIRIHLNKHLGEKLNKLQCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869094;
90% Identity
iTF_00264490;
80% Identity
-