Cflo001896.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- -
- Assembly
- GCA_003227725.1
- Location
- NW:583972-590509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0088 0.7 9.9 0.3 6 21 12 27 6 28 0.86 2 14 0.53 42 4.3 0.0 2 20 34 52 33 54 0.91 3 14 2.5 2e+02 2.2 0.1 1 12 227 238 227 245 0.92 4 14 0.0035 0.28 11.2 2.7 1 23 359 381 359 381 0.98 5 14 2.9e-05 0.0023 17.7 1.0 2 23 385 406 385 406 0.97 6 14 0.00022 0.018 15.0 4.7 1 23 417 439 417 439 0.98 7 14 0.013 1 9.4 0.3 1 23 458 479 458 479 0.78 8 14 0.00059 0.047 13.6 0.1 2 23 485 506 484 506 0.95 9 14 3.1e-05 0.0025 17.6 4.8 1 23 566 588 566 588 0.99 10 14 1.3e-06 0.00011 21.9 3.7 1 23 594 616 594 616 0.96 11 14 0.00015 0.012 15.4 4.1 1 23 622 644 622 644 0.97 12 14 1.7e-06 0.00013 21.6 0.6 1 23 650 672 650 672 0.98 13 14 1.9e-05 0.0016 18.3 0.2 1 23 676 698 676 698 0.99 14 14 0.00025 0.02 14.8 0.2 1 23 706 728 706 728 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCGCTGAATCTTATCTGCCCAATGTGTTGTGgtgaaacttttaataattctgaGTCTCTCAAATACCACTTGTTAAGTATTACGGACAATCTCTATTGTCCTGGCTGTTCACAGCGTTCTGATTCTGTGGCAGCGCTCATTCAGCATCTTGATAAATGCAAACAAGATTTGGAGCGCAAGGTGAGACTTGACGTTCTGACAGATAAACTCCGGAAAGAGACCGAAGCCAAAATGGATGCTAAAGTGATTAATCGAAGCTTTCTTGCGACTGTGAGTGACAATGGAATTGTTATAATGGGTGATCCACAGACGATACAAATGGATGAGAATGGAGAAATTAAAGTCATAGAAAAGATGGACACGGAAGAAATACAACCAGATCAAAATTCTTTGGATTTCAAGATGTCTGAAGAGCTTTGTGGAGTTAGTGACAGAGTACAAAAAAGACTACAGCCAATGCAAGAATTAATAGCTGTTCCTGTATCAAACTCCAGTACAGAATCCAAGGCACTGACAGAAAAGAGCGTAATTGCTGTATTACCGGAAAATTCCGAGTTTCTGGATGCCACTACCTTGATTGACGTTGACCGTATAAATGAGGCAGAAGAGATGGATGAAGCTGGTCTTCTGCATGTCAAGCAAGAACTATGTGAGATGGAATCTGATGCTGTATATAGCTGCACTAGCTGTGAAATCAGTTTCAACTCCATTCTAGAACATATCAAACAGTTCCATGATGGTCAGGAAGTATTGCTCGAAATGGCAGAGCAGTTAAACGATCTGTCGACGCCCACGAACCAAGTTTCCGCAATACCAGATTCAAGTTCTGAAAACATAGTAAATGCACGACAACGGCAAACAATGAACACGCTGCGTACAGAGGAATGTGTAGACAATGAGGGTAGGTTCTACACGAGAAAAGTAGTGCAAATTGAAAGATTCTGGGACCGTACACCAATCCAGATTACATCGCAATCAACAAAAGCTCCGATGATTGAGAAGTTCTTTTCGAATGTGGAAGGTGTTAAGGTACGAGAGAAGCGTTTGGCGACTGCGTCAATGCGAATGTACAGATGCAATCAATGCTTGCAGCAATTCTCCAAGTTAGGAAACTTTCGTGTGCATGCCTGTGTTCATGGCAACAATCGCTGCGAGCACTGCGATCAAAGCTTCGCGACACTCAAGGCTTTGCAGCTCCATGTGAAAGTACACGAAGGCGACATCGATCCAGGCCAAAAGTCATTTATTTGTACCATTTGTGGAACCGAGTTTTGTTCTCACAAAAGCTTACGTTTGCATTCGAGAATGCATGCTCCGGTAAGGGCCAGACATGTTGATGCACCAGAAGGAACTCCTAACGCGACTTTCACTTGTCCAGAATGTgGTAAAACTCTATCAGAATCATACAAAGATACACATATGGCACTACATACTGGTGATTCAGTGACATGCGCTGTCTGTAATCGGAAATTTGACTCCGCGGATAGTTTAACAATGCATGCAGCAGTGCATAGTGAAATAGCACTTCCGCAGTCGCCTACTCCGCCTGTTCCTATTTCATTCTCATCGACCAAAGAGACGGCAGTAACAACAACAACGACAATGGCGACGACGATTGCAATAACGTCAACAACGATGACAGCAACGACGACAACAGCGACAGTGGAAAGTAGTGATAGCCAGAAACCCTATCAGTGCCAGCATTGTGGTCGCAGATTTACCAGACCTCACGAAAAAGTGAAACATGAACGAATTCATACTGGGGAGAAACCACATGCTTGTGAGGTTTGTGGAAAGACTTTTCGCGTGTCCTATTGCCTGACCTTACACATGCGTACACATACCGGCGTGCGGCCTTATGCCTGCCAGCACTGTGGTAAACGATTCAAGGCATCCTCCGTCTATAATCATCACCTGCTAACACATGGCGAAGAGCGCGCTTATATGTGTCCGTATTGTCCGAAGACGTTCAAGACACGAGTGCAGCTGGCTGGTCACAAGAACAGCCACACGAAGCCATTTCGATGTACAGAGTGCTCGCGACCATTTGCATCGCTGTACGCCGTTCGCGCGCACATCCAAACGCACAAGAAAGATAATAATCTCAAGTTTAGCTGCTACATATGTGGTGCATCATATGGTCGGGCTTTCGCTCTAAAGGATCACCTGAAGCAACACGGTCAGAATGTGCTGGCACCACCAGAACCTGCACGGGAAGAGGAAGTACACGAGGACTTTCTCCTCAAGGAAGAAGGAACCGATCTCGTAGTCCCATCGGCTTCGCTTCCTCTCGTCACGCATCCCTCCGATGTGGATGATACcgattaa
- Protein Sequence
- MGSLNLICPMCCGETFNNSESLKYHLLSITDNLYCPGCSQRSDSVAALIQHLDKCKQDLERKVRLDVLTDKLRKETEAKMDAKVINRSFLATVSDNGIVIMGDPQTIQMDENGEIKVIEKMDTEEIQPDQNSLDFKMSEELCGVSDRVQKRLQPMQELIAVPVSNSSTESKALTEKSVIAVLPENSEFLDATTLIDVDRINEAEEMDEAGLLHVKQELCEMESDAVYSCTSCEISFNSILEHIKQFHDGQEVLLEMAEQLNDLSTPTNQVSAIPDSSSENIVNARQRQTMNTLRTEECVDNEGRFYTRKVVQIERFWDRTPIQITSQSTKAPMIEKFFSNVEGVKVREKRLATASMRMYRCNQCLQQFSKLGNFRVHACVHGNNRCEHCDQSFATLKALQLHVKVHEGDIDPGQKSFICTICGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDTHMALHTGDSVTCAVCNRKFDSADSLTMHAAVHSEIALPQSPTPPVPISFSSTKETAVTTTTTMATTIAITSTTMTATTTTATVESSDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYMCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQNVLAPPEPAREEEVHEDFLLKEEGTDLVVPSASLPLVTHPSDVDDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867643;
- 90% Identity
- iTF_00869070;
- 80% Identity
- -